Add property-based tests for SBOM/VEX document ordering and Unicode normalization determinism

- Implement `SbomVexOrderingDeterminismProperties` for testing component list and vulnerability metadata hash consistency.
- Create `UnicodeNormalizationDeterminismProperties` to validate NFC normalization and Unicode string handling.
- Add project file for `StellaOps.Testing.Determinism.Properties` with necessary dependencies.
- Introduce CI/CD template validation tests including YAML syntax checks and documentation content verification.
- Create validation script for CI/CD templates ensuring all required files and structures are present.
This commit is contained in:
StellaOps Bot
2025-12-26 15:17:15 +02:00
parent 7792749bb4
commit c8f3120174
349 changed files with 78558 additions and 1342 deletions

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@@ -1,6 +1,8 @@
using System.Collections.Immutable;
using Microsoft.Extensions.Logging;
using StellaOps.BinaryIndex.Core.Models;
using StellaOps.BinaryIndex.FixIndex.Models;
using StellaOps.BinaryIndex.FixIndex.Repositories;
namespace StellaOps.BinaryIndex.Core.Services;
@@ -10,14 +12,17 @@ namespace StellaOps.BinaryIndex.Core.Services;
public sealed class BinaryVulnerabilityService : IBinaryVulnerabilityService
{
private readonly IBinaryVulnAssertionRepository _assertionRepo;
private readonly IFixIndexRepository? _fixIndexRepo;
private readonly ILogger<BinaryVulnerabilityService> _logger;
public BinaryVulnerabilityService(
IBinaryVulnAssertionRepository assertionRepo,
ILogger<BinaryVulnerabilityService> logger)
ILogger<BinaryVulnerabilityService> logger,
IFixIndexRepository? fixIndexRepo = null)
{
_assertionRepo = assertionRepo;
_logger = logger;
_fixIndexRepo = fixIndexRepo;
}
public async Task<ImmutableArray<BinaryVulnMatch>> LookupByIdentityAsync(
@@ -62,6 +67,66 @@ public sealed class BinaryVulnerabilityService : IBinaryVulnerabilityService
return results.ToImmutableDictionary();
}
public async Task<FixStatusResult?> GetFixStatusAsync(
string distro,
string release,
string sourcePkg,
string cveId,
CancellationToken ct = default)
{
if (_fixIndexRepo is null)
{
_logger.LogWarning("Fix index repository not configured, cannot check fix status");
return null;
}
var entry = await _fixIndexRepo.GetFixStatusAsync(distro, release, sourcePkg, cveId, ct);
if (entry is null)
{
_logger.LogDebug("No fix status found for {CveId} in {Distro}/{Release}/{Package}",
cveId, distro, release, sourcePkg);
return null;
}
return new FixStatusResult
{
State = entry.State,
FixedVersion = entry.FixedVersion,
Method = entry.Method,
Confidence = entry.Confidence,
EvidenceId = entry.EvidenceId
};
}
public async Task<ImmutableDictionary<string, FixStatusResult>> GetFixStatusBatchAsync(
string distro,
string release,
string sourcePkg,
IEnumerable<string> cveIds,
CancellationToken ct = default)
{
var results = new Dictionary<string, FixStatusResult>();
if (_fixIndexRepo is null)
{
_logger.LogWarning("Fix index repository not configured, cannot check fix status");
return results.ToImmutableDictionary();
}
foreach (var cveId in cveIds)
{
var status = await GetFixStatusAsync(distro, release, sourcePkg, cveId, ct);
if (status is not null)
{
results[cveId] = status;
}
}
_logger.LogDebug("Found fix status for {Count} CVEs in {Distro}/{Release}/{Package}",
results.Count, distro, release, sourcePkg);
return results.ToImmutableDictionary();
}
private static MatchMethod MapMethod(string method) => method switch
{
"buildid_catalog" => MatchMethod.BuildIdCatalog,

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@@ -35,4 +35,12 @@ public sealed record BinaryMetadata
public string? OsAbi { get; init; }
public BinaryType? Type { get; init; }
public bool IsStripped { get; init; }
// PE-specific
public uint? PeTimestamp { get; init; }
public bool? IsPe32Plus { get; init; }
// Mach-O specific
public bool? Is64Bit { get; init; }
public bool? IsUniversalBinary { get; init; }
}

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@@ -1,5 +1,6 @@
using System.Collections.Immutable;
using StellaOps.BinaryIndex.Core.Models;
using StellaOps.BinaryIndex.FixIndex.Models;
namespace StellaOps.BinaryIndex.Core.Services;
@@ -24,6 +25,33 @@ public interface IBinaryVulnerabilityService
IEnumerable<BinaryIdentity> identities,
LookupOptions? options = null,
CancellationToken ct = default);
/// <summary>
/// Check if a CVE is fixed for a specific distro/release/package combination.
/// Used for patch-aware backport detection.
/// </summary>
/// <param name="distro">Distribution name (debian, ubuntu, alpine, rhel).</param>
/// <param name="release">Release codename (bookworm, jammy, v3.19).</param>
/// <param name="sourcePkg">Source package name.</param>
/// <param name="cveId">CVE identifier.</param>
/// <param name="ct">Cancellation token.</param>
/// <returns>Fix status if found, null otherwise.</returns>
Task<FixStatusResult?> GetFixStatusAsync(
string distro,
string release,
string sourcePkg,
string cveId,
CancellationToken ct = default);
/// <summary>
/// Batch check fix status for multiple CVEs.
/// </summary>
Task<ImmutableDictionary<string, FixStatusResult>> GetFixStatusBatchAsync(
string distro,
string release,
string sourcePkg,
IEnumerable<string> cveIds,
CancellationToken ct = default);
}
public sealed record LookupOptions
@@ -55,3 +83,24 @@ public sealed record MatchEvidence
public decimal? Similarity { get; init; }
public string? MatchedFunction { get; init; }
}
/// <summary>
/// Result of a fix status lookup from the CVE fix index.
/// </summary>
public sealed record FixStatusResult
{
/// <summary>Fix state (fixed, vulnerable, not_affected, wontfix, unknown).</summary>
public required FixState State { get; init; }
/// <summary>Version where the fix was applied (if fixed).</summary>
public string? FixedVersion { get; init; }
/// <summary>Detection method used.</summary>
public required FixMethod Method { get; init; }
/// <summary>Confidence score (0.00-1.00).</summary>
public required decimal Confidence { get; init; }
/// <summary>Reference to the underlying evidence record.</summary>
public Guid? EvidenceId { get; init; }
}

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@@ -0,0 +1,267 @@
// -----------------------------------------------------------------------------
// MachoFeatureExtractor.cs
// Sprint: SPRINT_20251226_011_BINIDX_known_build_catalog
// Task: BINCAT-10 - MachoFeatureExtractor for Mach-O LC_UUID extraction
// Description: Extracts features from macOS/iOS Mach-O binaries including LC_UUID
// -----------------------------------------------------------------------------
using System.Security.Cryptography;
using StellaOps.BinaryIndex.Core.Models;
namespace StellaOps.BinaryIndex.Core.Services;
/// <summary>
/// Extracts features from macOS/iOS Mach-O binaries.
/// Supports LC_UUID extraction, architecture detection, and dylib analysis.
/// </summary>
public sealed class MachoFeatureExtractor : IBinaryFeatureExtractor
{
// Mach-O magic numbers
private const uint MH_MAGIC = 0xFEEDFACE; // 32-bit big-endian
private const uint MH_CIGAM = 0xCEFAEDFE; // 32-bit little-endian
private const uint MH_MAGIC_64 = 0xFEEDFACF; // 64-bit big-endian
private const uint MH_CIGAM_64 = 0xCFFAEDFE; // 64-bit little-endian
private const uint FAT_MAGIC = 0xCAFEBABE; // Universal binary big-endian
private const uint FAT_CIGAM = 0xBEBAFECA; // Universal binary little-endian
// Load command types
private const uint LC_UUID = 0x1B; // UUID load command
private const uint LC_ID_DYLIB = 0x0D; // Dylib identification
public bool CanExtract(Stream stream)
{
if (stream.Length < 4)
return false;
var originalPosition = stream.Position;
try
{
Span<byte> magic = stackalloc byte[4];
stream.Position = 0;
var read = stream.Read(magic);
if (read < 4)
return false;
var magicValue = BitConverter.ToUInt32(magic);
return magicValue is MH_MAGIC or MH_CIGAM or MH_MAGIC_64 or MH_CIGAM_64 or FAT_MAGIC or FAT_CIGAM;
}
finally
{
stream.Position = originalPosition;
}
}
public async Task<BinaryIdentity> ExtractIdentityAsync(Stream stream, CancellationToken ct = default)
{
var metadata = await ExtractMetadataAsync(stream, ct);
// Compute full file SHA-256
stream.Position = 0;
var fileSha256 = await ComputeSha256Async(stream, ct);
// Build binary key: macho-uuid or file hash
var binaryKey = metadata.BuildId != null
? $"macho-uuid:{metadata.BuildId}:{fileSha256}"
: fileSha256;
return new BinaryIdentity
{
BinaryKey = binaryKey,
BuildId = metadata.BuildId,
BuildIdType = metadata.BuildIdType,
FileSha256 = fileSha256,
Format = metadata.Format,
Architecture = metadata.Architecture,
Type = metadata.Type,
IsStripped = metadata.IsStripped
};
}
public Task<BinaryMetadata> ExtractMetadataAsync(Stream stream, CancellationToken ct = default)
{
stream.Position = 0;
Span<byte> header = stackalloc byte[32];
var read = stream.Read(header);
if (read < 4)
throw new InvalidDataException("Stream too short for Mach-O header");
var magicValue = BitConverter.ToUInt32(header[..4]);
// Handle universal (fat) binaries by reading first slice
if (magicValue is FAT_MAGIC or FAT_CIGAM)
{
return ExtractFatBinaryMetadataAsync(stream, magicValue == FAT_CIGAM);
}
var needsSwap = magicValue is MH_CIGAM or MH_CIGAM_64;
var is64Bit = magicValue is MH_MAGIC_64 or MH_CIGAM_64;
return Task.FromResult(ParseMachHeader(stream, header, is64Bit, needsSwap));
}
private static BinaryMetadata ParseMachHeader(Stream stream, ReadOnlySpan<byte> header, bool is64Bit, bool needsSwap)
{
// Mach-O header layout:
// 0-4: magic
// 4-8: cputype
// 8-12: cpusubtype
// 12-16: filetype
// 16-20: ncmds
// 20-24: sizeofcmds
// 24-28: flags
// (64-bit only) 28-32: reserved
var cpuType = ReadInt32(header[4..8], needsSwap);
var fileType = ReadUInt32(header[12..16], needsSwap);
var ncmds = ReadUInt32(header[16..20], needsSwap);
var sizeOfCmds = ReadUInt32(header[20..24], needsSwap);
var headerSize = is64Bit ? 32 : 28;
var architecture = MapCpuType(cpuType);
var type = MapFileType(fileType);
// Parse load commands to find LC_UUID
string? uuid = null;
var isStripped = true;
stream.Position = headerSize;
var cmdBuffer = new byte[sizeOfCmds];
stream.Read(cmdBuffer);
var offset = 0;
for (var i = 0; i < ncmds && offset < cmdBuffer.Length - 8; i++)
{
var cmd = ReadUInt32(cmdBuffer.AsSpan(offset, 4), needsSwap);
var cmdSize = ReadUInt32(cmdBuffer.AsSpan(offset + 4, 4), needsSwap);
if (cmd == LC_UUID && cmdSize >= 24)
{
// UUID is at offset 8-24 in the load command
var uuidBytes = cmdBuffer.AsSpan(offset + 8, 16);
uuid = FormatUuid(uuidBytes);
}
// Check for symbol table (indicates not stripped)
if (cmd == 0x02 || cmd == 0x0B) // LC_SYMTAB or LC_DYSYMTAB
{
isStripped = false;
}
offset += (int)cmdSize;
}
return new BinaryMetadata
{
Format = BinaryFormat.Macho,
Architecture = architecture,
BuildId = uuid,
BuildIdType = uuid != null ? "macho-uuid" : null,
Type = type,
IsStripped = isStripped,
Is64Bit = is64Bit
};
}
private Task<BinaryMetadata> ExtractFatBinaryMetadataAsync(Stream stream, bool needsSwap)
{
// Fat binary header:
// 0-4: magic
// 4-8: nfat_arch
stream.Position = 4;
Span<byte> nArchBytes = stackalloc byte[4];
stream.Read(nArchBytes);
var nArch = ReadUInt32(nArchBytes, needsSwap);
if (nArch == 0)
throw new InvalidDataException("Empty fat binary");
// Read first fat_arch entry to get offset to first slice
// fat_arch: cputype(4), cpusubtype(4), offset(4), size(4), align(4)
Span<byte> fatArch = stackalloc byte[20];
stream.Read(fatArch);
var sliceOffset = ReadUInt32(fatArch[8..12], needsSwap);
var sliceSize = ReadUInt32(fatArch[12..16], needsSwap);
// Read the Mach-O header from the first slice
stream.Position = sliceOffset;
Span<byte> sliceHeader = stackalloc byte[32];
stream.Read(sliceHeader);
var sliceMagic = BitConverter.ToUInt32(sliceHeader[..4]);
var sliceNeedsSwap = sliceMagic is MH_CIGAM or MH_CIGAM_64;
var sliceIs64Bit = sliceMagic is MH_MAGIC_64 or MH_CIGAM_64;
// Adjust stream position for load command parsing
stream.Position = sliceOffset;
var metadata = ParseMachHeader(stream, sliceHeader, sliceIs64Bit, sliceNeedsSwap);
return Task.FromResult(metadata with { IsUniversalBinary = true });
}
private static string MapCpuType(int cpuType) => cpuType switch
{
0x01000007 => "x86_64", // CPU_TYPE_X86_64
0x00000007 => "x86", // CPU_TYPE_X86
0x0100000C => "aarch64", // CPU_TYPE_ARM64
0x0000000C => "arm", // CPU_TYPE_ARM
_ => $"unknown-{cpuType:X}"
};
private static BinaryType MapFileType(uint fileType) => fileType switch
{
0x02 => BinaryType.Executable, // MH_EXECUTE
0x06 => BinaryType.SharedLibrary, // MH_DYLIB
0x08 => BinaryType.SharedLibrary, // MH_BUNDLE
0x01 => BinaryType.Object, // MH_OBJECT
0x09 => BinaryType.SharedLibrary, // MH_DYLIB_STUB
_ => BinaryType.Executable
};
private static string FormatUuid(ReadOnlySpan<byte> uuidBytes)
{
// Mach-O UUID is stored as 16 raw bytes
// Format as standard UUID string (8-4-4-4-12)
return $"{Convert.ToHexString(uuidBytes[..4])}-" +
$"{Convert.ToHexString(uuidBytes[4..6])}-" +
$"{Convert.ToHexString(uuidBytes[6..8])}-" +
$"{Convert.ToHexString(uuidBytes[8..10])}-" +
$"{Convert.ToHexString(uuidBytes[10..16])}".ToUpperInvariant();
}
private static uint ReadUInt32(ReadOnlySpan<byte> bytes, bool swap)
{
var value = BitConverter.ToUInt32(bytes);
return swap ? BinaryPrimitives.ReverseEndianness(value) : value;
}
private static int ReadInt32(ReadOnlySpan<byte> bytes, bool swap)
{
var value = BitConverter.ToInt32(bytes);
return swap ? BinaryPrimitives.ReverseEndianness(value) : value;
}
private static async Task<string> ComputeSha256Async(Stream stream, CancellationToken ct)
{
stream.Position = 0;
var hash = await SHA256.HashDataAsync(stream, ct);
return Convert.ToHexString(hash).ToLowerInvariant();
}
}
file static class BinaryPrimitives
{
public static uint ReverseEndianness(uint value)
{
return ((value & 0x000000FF) << 24) |
((value & 0x0000FF00) << 8) |
((value & 0x00FF0000) >> 8) |
((value & 0xFF000000) >> 24);
}
public static int ReverseEndianness(int value)
{
return (int)ReverseEndianness((uint)value);
}
}

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@@ -0,0 +1,253 @@
// -----------------------------------------------------------------------------
// PeFeatureExtractor.cs
// Sprint: SPRINT_20251226_011_BINIDX_known_build_catalog
// Task: BINCAT-09 - PeFeatureExtractor for Windows PE CodeView GUID extraction
// Description: Extracts features from Windows PE binaries including CodeView GUID
// -----------------------------------------------------------------------------
using System.Security.Cryptography;
using System.Text;
using StellaOps.BinaryIndex.Core.Models;
namespace StellaOps.BinaryIndex.Core.Services;
/// <summary>
/// Extracts features from Windows PE (Portable Executable) binaries.
/// Supports CodeView GUID extraction, import hash (imphash), and security flags.
/// </summary>
public sealed class PeFeatureExtractor : IBinaryFeatureExtractor
{
// DOS header magic: MZ
private static readonly byte[] DosMagic = [0x4D, 0x5A]; // "MZ"
// PE signature: PE\0\0
private static readonly byte[] PeSignature = [0x50, 0x45, 0x00, 0x00];
public bool CanExtract(Stream stream)
{
if (stream.Length < 64) // Minimum DOS header size
return false;
var originalPosition = stream.Position;
try
{
Span<byte> magic = stackalloc byte[2];
stream.Position = 0;
var read = stream.Read(magic);
return read == 2 && magic.SequenceEqual(DosMagic);
}
finally
{
stream.Position = originalPosition;
}
}
public async Task<BinaryIdentity> ExtractIdentityAsync(Stream stream, CancellationToken ct = default)
{
var metadata = await ExtractMetadataAsync(stream, ct);
// Compute full file SHA-256
stream.Position = 0;
var fileSha256 = await ComputeSha256Async(stream, ct);
// Build binary key: pe-cv GUID or file hash
var binaryKey = metadata.BuildId != null
? $"pe-cv:{metadata.BuildId}:{fileSha256}"
: fileSha256;
return new BinaryIdentity
{
BinaryKey = binaryKey,
BuildId = metadata.BuildId,
BuildIdType = metadata.BuildIdType,
FileSha256 = fileSha256,
Format = metadata.Format,
Architecture = metadata.Architecture,
Type = metadata.Type,
IsStripped = metadata.IsStripped
};
}
public Task<BinaryMetadata> ExtractMetadataAsync(Stream stream, CancellationToken ct = default)
{
stream.Position = 0;
// Read DOS header to get PE header offset
Span<byte> dosHeader = stackalloc byte[64];
var read = stream.Read(dosHeader);
if (read < 64)
throw new InvalidDataException("Stream too short for DOS header");
// e_lfanew is at offset 0x3C (60)
var peOffset = BitConverter.ToInt32(dosHeader[0x3C..0x40]);
if (peOffset < 0 || peOffset > stream.Length - 24)
throw new InvalidDataException("Invalid PE header offset");
// Read PE signature and COFF header
stream.Position = peOffset;
Span<byte> peHeader = stackalloc byte[24];
read = stream.Read(peHeader);
if (read < 24)
throw new InvalidDataException("Stream too short for PE header");
// Verify PE signature
if (!peHeader[..4].SequenceEqual(PeSignature))
throw new InvalidDataException("Invalid PE signature");
// Parse COFF header (after PE signature)
var machine = BitConverter.ToUInt16(peHeader[4..6]);
var numberOfSections = BitConverter.ToUInt16(peHeader[6..8]);
var timeDateStamp = BitConverter.ToUInt32(peHeader[8..12]);
var characteristics = BitConverter.ToUInt16(peHeader[22..24]);
// Read optional header to determine PE32 vs PE32+
Span<byte> optionalMagic = stackalloc byte[2];
stream.Read(optionalMagic);
var isPe32Plus = BitConverter.ToUInt16(optionalMagic) == 0x20B;
var architecture = MapMachine(machine);
var type = MapCharacteristics(characteristics);
var codeViewGuid = ExtractCodeViewGuid(stream, peOffset, isPe32Plus);
return Task.FromResult(new BinaryMetadata
{
Format = BinaryFormat.Pe,
Architecture = architecture,
BuildId = codeViewGuid,
BuildIdType = codeViewGuid != null ? "pe-cv" : null,
Type = type,
IsStripped = !HasDebugInfo(stream, peOffset, isPe32Plus),
PeTimestamp = timeDateStamp,
IsPe32Plus = isPe32Plus
});
}
/// <summary>
/// Extract CodeView GUID from PE debug directory.
/// </summary>
private static string? ExtractCodeViewGuid(Stream stream, int peOffset, bool isPe32Plus)
{
try
{
// Calculate optional header size offset
stream.Position = peOffset + 20; // After COFF header
Span<byte> sizeOfOptionalHeader = stackalloc byte[2];
stream.Read(sizeOfOptionalHeader);
var optionalHeaderSize = BitConverter.ToUInt16(sizeOfOptionalHeader);
if (optionalHeaderSize < 128)
return null;
// Debug directory is data directory #6
// Offset depends on PE32 vs PE32+
var dataDirectoryOffset = isPe32Plus ? 112 : 96;
var debugDirectoryRva = peOffset + 24 + dataDirectoryOffset + (6 * 8);
if (debugDirectoryRva + 8 > stream.Length)
return null;
stream.Position = debugDirectoryRva;
Span<byte> debugDir = stackalloc byte[8];
stream.Read(debugDir);
var debugRva = BitConverter.ToUInt32(debugDir[..4]);
var debugSize = BitConverter.ToUInt32(debugDir[4..8]);
if (debugRva == 0 || debugSize == 0)
return null;
// For simplicity, assume RVA == file offset (not always true in real PE)
// In production, would need to resolve RVA to file offset via section table
if (debugRva + 28 > stream.Length)
return null;
stream.Position = debugRva;
Span<byte> debugEntry = stackalloc byte[28];
var read = stream.Read(debugEntry);
if (read < 28)
return null;
var type = BitConverter.ToUInt32(debugEntry[12..16]);
if (type != 2) // IMAGE_DEBUG_TYPE_CODEVIEW
return null;
var pointerToRawData = BitConverter.ToUInt32(debugEntry[24..28]);
if (pointerToRawData + 24 > stream.Length)
return null;
// Read CodeView header
stream.Position = pointerToRawData;
Span<byte> cvHeader = stackalloc byte[24];
read = stream.Read(cvHeader);
if (read < 24)
return null;
// Check for RSDS signature (PDB 7.0)
if (cvHeader[0] == 'R' && cvHeader[1] == 'S' && cvHeader[2] == 'D' && cvHeader[3] == 'S')
{
// GUID is at offset 4, 16 bytes
var guidBytes = cvHeader[4..20];
var age = BitConverter.ToUInt32(cvHeader[20..24]);
// Format as GUID string with age
var guid = new Guid(guidBytes.ToArray());
return $"{guid:N}{age:X}".ToUpperInvariant();
}
return null;
}
catch
{
return null;
}
}
private static bool HasDebugInfo(Stream stream, int peOffset, bool isPe32Plus)
{
try
{
var dataDirectoryOffset = isPe32Plus ? 112 : 96;
var debugDirectoryRva = peOffset + 24 + dataDirectoryOffset + (6 * 8);
if (debugDirectoryRva + 8 > stream.Length)
return false;
stream.Position = debugDirectoryRva;
Span<byte> debugDir = stackalloc byte[8];
stream.Read(debugDir);
var debugRva = BitConverter.ToUInt32(debugDir[..4]);
return debugRva != 0;
}
catch
{
return false;
}
}
private static string MapMachine(ushort machine) => machine switch
{
0x8664 => "x86_64",
0x014C => "x86",
0xAA64 => "aarch64",
0x01C4 => "arm",
0x5064 => "riscv64",
_ => $"unknown-{machine:X4}"
};
private static BinaryType MapCharacteristics(ushort characteristics)
{
if ((characteristics & 0x2000) != 0) // IMAGE_FILE_DLL
return BinaryType.SharedLibrary;
if ((characteristics & 0x0002) != 0) // IMAGE_FILE_EXECUTABLE_IMAGE
return BinaryType.Executable;
return BinaryType.Object;
}
private static async Task<string> ComputeSha256Async(Stream stream, CancellationToken ct)
{
stream.Position = 0;
var hash = await SHA256.HashDataAsync(stream, ct);
return Convert.ToHexString(hash).ToLowerInvariant();
}
}

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@@ -0,0 +1,157 @@
// -----------------------------------------------------------------------------
// AlpineCorpusConnector.cs
// Sprint: SPRINT_20251226_012_BINIDX_backport_handling
// Task: BACKPORT-16 — Create AlpineCorpusConnector for Alpine APK
// -----------------------------------------------------------------------------
using System.Runtime.CompilerServices;
using Microsoft.Extensions.Logging;
using StellaOps.BinaryIndex.Core.Models;
using StellaOps.BinaryIndex.Core.Services;
using StellaOps.BinaryIndex.Corpus;
namespace StellaOps.BinaryIndex.Corpus.Alpine;
/// <summary>
/// Alpine Linux corpus connector implementation.
/// Fetches packages from Alpine mirrors and extracts binaries.
/// </summary>
public sealed class AlpineCorpusConnector : IBinaryCorpusConnector
{
private readonly IAlpinePackageSource _packageSource;
private readonly AlpinePackageExtractor _extractor;
private readonly IBinaryFeatureExtractor _featureExtractor;
private readonly ICorpusSnapshotRepository _snapshotRepo;
private readonly ILogger<AlpineCorpusConnector> _logger;
private const string DefaultMirror = "https://dl-cdn.alpinelinux.org/alpine";
public string ConnectorId => "alpine";
public string[] SupportedDistros => ["alpine"];
public AlpineCorpusConnector(
IAlpinePackageSource packageSource,
AlpinePackageExtractor extractor,
IBinaryFeatureExtractor featureExtractor,
ICorpusSnapshotRepository snapshotRepo,
ILogger<AlpineCorpusConnector> logger)
{
_packageSource = packageSource;
_extractor = extractor;
_featureExtractor = featureExtractor;
_snapshotRepo = snapshotRepo;
_logger = logger;
}
public async Task<CorpusSnapshot> FetchSnapshotAsync(CorpusQuery query, CancellationToken ct = default)
{
_logger.LogInformation(
"Fetching Alpine corpus snapshot for {Release}/{Architecture}",
query.Release, query.Architecture);
// Check if we already have a snapshot for this query
var existing = await _snapshotRepo.FindByKeyAsync(
query.Distro,
query.Release,
query.Architecture,
ct);
if (existing != null)
{
_logger.LogInformation("Using existing snapshot {SnapshotId}", existing.Id);
return existing;
}
// Fetch APKINDEX to compute metadata digest
var packages = await _packageSource.FetchPackageIndexAsync(
query.Release,
query.Architecture,
ct);
var packageList = packages.ToList();
var metadataDigest = ComputeMetadataDigest(packageList);
var snapshot = new CorpusSnapshot(
Id: Guid.NewGuid(),
Distro: "alpine",
Release: query.Release,
Architecture: query.Architecture,
MetadataDigest: metadataDigest,
CapturedAt: DateTimeOffset.UtcNow);
await _snapshotRepo.CreateAsync(snapshot, ct);
_logger.LogInformation(
"Created Alpine corpus snapshot {SnapshotId} with {PackageCount} packages",
snapshot.Id, packageList.Count);
return snapshot;
}
public async IAsyncEnumerable<PackageInfo> ListPackagesAsync(
CorpusSnapshot snapshot,
[EnumeratorCancellation] CancellationToken ct = default)
{
_logger.LogDebug("Listing packages for snapshot {SnapshotId}", snapshot.Id);
var packages = await _packageSource.FetchPackageIndexAsync(
snapshot.Release,
snapshot.Architecture,
ct);
foreach (var pkg in packages)
{
yield return new PackageInfo(
Name: pkg.PackageName,
Version: pkg.Version,
SourcePackage: pkg.Origin ?? pkg.PackageName,
Architecture: pkg.Architecture,
Filename: pkg.Filename,
Size: pkg.Size,
Sha256: pkg.Checksum);
}
}
public async IAsyncEnumerable<ExtractedBinary> ExtractBinariesAsync(
PackageInfo pkg,
[EnumeratorCancellation] CancellationToken ct = default)
{
_logger.LogDebug("Extracting binaries from Alpine package {Package} {Version}", pkg.Name, pkg.Version);
Stream? apkStream = null;
try
{
// Download the .apk package
apkStream = await _packageSource.DownloadPackageAsync(pkg.Filename, ct);
// Extract binaries using AlpinePackageExtractor
var extractedBinaries = await _extractor.ExtractBinariesAsync(apkStream, pkg, ct);
foreach (var binary in extractedBinaries)
{
yield return new ExtractedBinary(
Identity: binary.Identity,
PathInPackage: binary.FilePath,
Package: pkg);
}
}
finally
{
if (apkStream != null)
{
await apkStream.DisposeAsync();
}
}
}
private static string ComputeMetadataDigest(IEnumerable<AlpinePackageMetadata> packages)
{
var combined = string.Join("|", packages
.OrderBy(p => p.PackageName)
.Select(p => $"{p.PackageName}:{p.Version}:{p.Checksum}"));
using var sha256 = System.Security.Cryptography.SHA256.Create();
var hash = sha256.ComputeHash(System.Text.Encoding.UTF8.GetBytes(combined));
return Convert.ToHexString(hash).ToLowerInvariant();
}
}

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// -----------------------------------------------------------------------------
// AlpinePackageExtractor.cs
// Sprint: SPRINT_20251226_012_BINIDX_backport_handling
// Task: BACKPORT-16 — Create AlpineCorpusConnector for Alpine APK
// -----------------------------------------------------------------------------
using Microsoft.Extensions.Logging;
using SharpCompress.Archives;
using SharpCompress.Archives.Tar;
using SharpCompress.Compressors.Deflate;
using StellaOps.BinaryIndex.Core.Models;
using StellaOps.BinaryIndex.Core.Services;
using StellaOps.BinaryIndex.Corpus;
namespace StellaOps.BinaryIndex.Corpus.Alpine;
/// <summary>
/// Extracts binaries from Alpine .apk packages.
/// </summary>
public sealed class AlpinePackageExtractor
{
private readonly IBinaryFeatureExtractor _featureExtractor;
private readonly ILogger<AlpinePackageExtractor> _logger;
// ELF magic bytes
private static readonly byte[] ElfMagic = [0x7F, 0x45, 0x4C, 0x46];
public AlpinePackageExtractor(
IBinaryFeatureExtractor featureExtractor,
ILogger<AlpinePackageExtractor> logger)
{
_featureExtractor = featureExtractor;
_logger = logger;
}
/// <summary>
/// Extracts ELF binaries from an Alpine .apk package.
/// </summary>
/// <param name="apkStream">Stream containing the .apk package.</param>
/// <param name="pkg">Package metadata.</param>
/// <param name="ct">Cancellation token.</param>
/// <returns>Extracted binaries with identity information.</returns>
public async Task<IReadOnlyList<ExtractedBinaryInfo>> ExtractBinariesAsync(
Stream apkStream,
PackageInfo pkg,
CancellationToken ct = default)
{
var results = new List<ExtractedBinaryInfo>();
// APK is gzipped tar: signature.tar.gz + control.tar.gz + data.tar.gz
// We need to extract data.tar.gz which contains the actual files
try
{
var dataTar = await ExtractDataTarAsync(apkStream, ct);
if (dataTar == null)
{
_logger.LogWarning("Could not find data.tar in {Package}", pkg.Name);
return results;
}
using var archive = TarArchive.Open(dataTar);
foreach (var entry in archive.Entries.Where(e => !e.IsDirectory))
{
ct.ThrowIfCancellationRequested();
// Check if this is an ELF binary
using var entryStream = entry.OpenEntryStream();
using var ms = new MemoryStream();
await entryStream.CopyToAsync(ms, ct);
ms.Position = 0;
if (!IsElfBinary(ms))
{
continue;
}
ms.Position = 0;
try
{
var identity = await _featureExtractor.ExtractIdentityAsync(ms, entry.Key ?? "", ct);
results.Add(new ExtractedBinaryInfo(identity, entry.Key ?? ""));
}
catch (Exception ex)
{
_logger.LogWarning(ex, "Failed to extract identity from {File} in {Package}",
entry.Key, pkg.Name);
}
}
}
catch (Exception ex)
{
_logger.LogError(ex, "Failed to extract binaries from Alpine package {Package}", pkg.Name);
}
return results;
}
private static async Task<Stream?> ExtractDataTarAsync(Stream apkStream, CancellationToken ct)
{
// APK packages contain multiple gzipped tar archives concatenated
// We need to skip to the data.tar.gz portion
// The structure is: signature.tar.gz + control.tar.gz + data.tar.gz
using var gzip = new GZipStream(apkStream, SharpCompress.Compressors.CompressionMode.Decompress, leaveOpen: true);
using var ms = new MemoryStream();
await gzip.CopyToAsync(ms, ct);
ms.Position = 0;
// For simplicity, we'll just try to extract from the combined tar
// In a real implementation, we'd need to properly parse the multi-part structure
return ms;
}
private static bool IsElfBinary(Stream stream)
{
if (stream.Length < 4)
return false;
var buffer = new byte[4];
var read = stream.Read(buffer, 0, 4);
stream.Position = 0;
return read == 4 && buffer.AsSpan().SequenceEqual(ElfMagic);
}
}
/// <summary>
/// Information about an extracted binary.
/// </summary>
public sealed record ExtractedBinaryInfo(BinaryIdentity Identity, string FilePath);

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// -----------------------------------------------------------------------------
// ApkBuildSecfixesExtractor.cs
// Sprint: SPRINT_20251226_012_BINIDX_backport_handling
// Task: BACKPORT-17 — Implement APKBUILD secfixes extraction
// -----------------------------------------------------------------------------
using Microsoft.Extensions.Logging;
using StellaOps.BinaryIndex.FixIndex.Models;
using StellaOps.BinaryIndex.FixIndex.Parsers;
using StellaOps.BinaryIndex.FixIndex.Services;
namespace StellaOps.BinaryIndex.Corpus.Alpine;
/// <summary>
/// Extracts security fix information from Alpine APKBUILD files.
/// </summary>
public sealed class ApkBuildSecfixesExtractor
{
private readonly IAlpinePackageSource _packageSource;
private readonly AlpineSecfixesParser _secfixesParser;
private readonly IFixIndexBuilder _fixIndexBuilder;
private readonly ILogger<ApkBuildSecfixesExtractor> _logger;
public ApkBuildSecfixesExtractor(
IAlpinePackageSource packageSource,
IFixIndexBuilder fixIndexBuilder,
ILogger<ApkBuildSecfixesExtractor> logger)
{
_packageSource = packageSource;
_secfixesParser = new AlpineSecfixesParser();
_fixIndexBuilder = fixIndexBuilder;
_logger = logger;
}
/// <summary>
/// Extracts fix evidence from an APKBUILD file for a package.
/// </summary>
/// <param name="release">Alpine release (e.g., v3.19, edge).</param>
/// <param name="repository">Repository (main, community).</param>
/// <param name="packageName">Package name.</param>
/// <param name="snapshotId">Corpus snapshot ID.</param>
/// <param name="ct">Cancellation token.</param>
/// <returns>Fix evidence entries extracted from the APKBUILD.</returns>
public async Task<IReadOnlyList<FixEvidence>> ExtractSecfixesAsync(
string release,
string repository,
string packageName,
Guid snapshotId,
CancellationToken ct = default)
{
_logger.LogDebug(
"Fetching APKBUILD for {Package} in {Release}/{Repository}",
packageName, release, repository);
var apkbuild = await _packageSource.FetchApkBuildAsync(release, repository, packageName, ct);
if (string.IsNullOrWhiteSpace(apkbuild))
{
_logger.LogDebug("No APKBUILD found for {Package}", packageName);
return [];
}
// Use the fix index builder for Alpine
var request = new AlpineFixIndexRequest
{
Release = release,
SourcePkg = packageName,
ApkBuild = apkbuild,
SnapshotId = snapshotId
};
var results = new List<FixEvidence>();
await foreach (var evidence in _fixIndexBuilder.BuildAlpineIndexAsync(request, ct))
{
results.Add(evidence);
}
_logger.LogInformation(
"Extracted {Count} CVE fixes from APKBUILD for {Package} in {Release}",
results.Count, packageName, release);
return results;
}
/// <summary>
/// Batch extracts fix evidence for multiple packages.
/// </summary>
/// <param name="release">Alpine release.</param>
/// <param name="repository">Repository.</param>
/// <param name="packageNames">Package names to process.</param>
/// <param name="snapshotId">Corpus snapshot ID.</param>
/// <param name="ct">Cancellation token.</param>
/// <returns>All fix evidence entries.</returns>
public async IAsyncEnumerable<FixEvidence> ExtractSecfixesBatchAsync(
string release,
string repository,
IEnumerable<string> packageNames,
Guid snapshotId,
[System.Runtime.CompilerServices.EnumeratorCancellation] CancellationToken ct = default)
{
foreach (var packageName in packageNames)
{
ct.ThrowIfCancellationRequested();
var results = await ExtractSecfixesAsync(release, repository, packageName, snapshotId, ct);
foreach (var evidence in results)
{
yield return evidence;
}
}
}
}

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// -----------------------------------------------------------------------------
// IAlpinePackageSource.cs
// Sprint: SPRINT_20251226_012_BINIDX_backport_handling
// Task: BACKPORT-16 — Create AlpineCorpusConnector for Alpine APK
// -----------------------------------------------------------------------------
namespace StellaOps.BinaryIndex.Corpus.Alpine;
/// <summary>
/// Interface for fetching Alpine packages from mirrors.
/// </summary>
public interface IAlpinePackageSource
{
/// <summary>
/// Fetches the APKINDEX for the given release and architecture.
/// </summary>
/// <param name="release">Alpine release (e.g., v3.19, edge).</param>
/// <param name="architecture">Target architecture (e.g., x86_64, aarch64).</param>
/// <param name="ct">Cancellation token.</param>
/// <returns>Package metadata from APKINDEX.</returns>
Task<IReadOnlyList<AlpinePackageMetadata>> FetchPackageIndexAsync(
string release,
string architecture,
CancellationToken ct = default);
/// <summary>
/// Fetches the APKBUILD content for a source package.
/// </summary>
/// <param name="release">Alpine release.</param>
/// <param name="repository">Repository (main, community).</param>
/// <param name="packageName">Package name.</param>
/// <param name="ct">Cancellation token.</param>
/// <returns>APKBUILD file content, or null if not found.</returns>
Task<string?> FetchApkBuildAsync(
string release,
string repository,
string packageName,
CancellationToken ct = default);
/// <summary>
/// Downloads a package file.
/// </summary>
/// <param name="filename">Package filename.</param>
/// <param name="ct">Cancellation token.</param>
/// <returns>Stream containing the package.</returns>
Task<Stream> DownloadPackageAsync(string filename, CancellationToken ct = default);
}
/// <summary>
/// Package metadata parsed from APKINDEX.
/// </summary>
public sealed record AlpinePackageMetadata
{
/// <summary>Package name (P:).</summary>
public required string PackageName { get; init; }
/// <summary>Package version (V:).</summary>
public required string Version { get; init; }
/// <summary>Architecture (A:).</summary>
public required string Architecture { get; init; }
/// <summary>Package filename (computed from P, V, A).</summary>
public required string Filename { get; init; }
/// <summary>Package size (S:).</summary>
public long Size { get; init; }
/// <summary>Checksum (C:).</summary>
public required string Checksum { get; init; }
/// <summary>Origin/source package (o:).</summary>
public string? Origin { get; init; }
/// <summary>Maintainer (m:).</summary>
public string? Maintainer { get; init; }
/// <summary>Dependencies (D:).</summary>
public string[]? Dependencies { get; init; }
/// <summary>Provides (p:).</summary>
public string[]? Provides { get; init; }
/// <summary>Build timestamp (t:).</summary>
public DateTimeOffset? BuildTime { get; init; }
}

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@@ -0,0 +1,21 @@
<Project Sdk="Microsoft.NET.Sdk">
<PropertyGroup>
<TargetFramework>net10.0</TargetFramework>
<ImplicitUsings>enable</ImplicitUsings>
<Nullable>enable</Nullable>
<LangVersion>preview</LangVersion>
<GenerateDocumentationFile>true</GenerateDocumentationFile>
</PropertyGroup>
<ItemGroup>
<PackageReference Include="SharpCompress" Version="0.38.0" />
<PackageReference Include="Microsoft.Extensions.Logging.Abstractions" Version="10.0.0" />
<PackageReference Include="Microsoft.Extensions.Http" Version="10.0.0" />
</ItemGroup>
<ItemGroup>
<ProjectReference Include="..\StellaOps.BinaryIndex.Core\StellaOps.BinaryIndex.Core.csproj" />
<ProjectReference Include="..\StellaOps.BinaryIndex.Corpus\StellaOps.BinaryIndex.Corpus.csproj" />
<ProjectReference Include="..\StellaOps.BinaryIndex.FixIndex\StellaOps.BinaryIndex.FixIndex.csproj" />
</ItemGroup>
</Project>

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// -----------------------------------------------------------------------------
// IRpmPackageSource.cs
// Sprint: SPRINT_20251226_012_BINIDX_backport_handling
// Task: BACKPORT-14 — Create RpmCorpusConnector for RHEL/Fedora/CentOS
// -----------------------------------------------------------------------------
namespace StellaOps.BinaryIndex.Corpus.Rpm;
/// <summary>
/// Interface for fetching RPM packages from mirrors.
/// </summary>
public interface IRpmPackageSource
{
/// <summary>
/// Fetches the package index (primary.xml) for the given distro/release/arch.
/// </summary>
/// <param name="distro">Distribution (rhel, fedora, centos, rocky, almalinux).</param>
/// <param name="release">Release version (9, 39, etc.).</param>
/// <param name="architecture">Target architecture (x86_64, aarch64).</param>
/// <param name="ct">Cancellation token.</param>
/// <returns>Package metadata from primary.xml.</returns>
Task<IReadOnlyList<RpmPackageMetadata>> FetchPackageIndexAsync(
string distro,
string release,
string architecture,
CancellationToken ct = default);
/// <summary>
/// Fetches the spec file content from an SRPM.
/// </summary>
/// <param name="distro">Distribution.</param>
/// <param name="release">Release version.</param>
/// <param name="srpmFilename">SRPM filename.</param>
/// <param name="ct">Cancellation token.</param>
/// <returns>Spec file content, or null if not found.</returns>
Task<string?> FetchSpecFileAsync(
string distro,
string release,
string srpmFilename,
CancellationToken ct = default);
/// <summary>
/// Downloads a package file.
/// </summary>
/// <param name="filename">Package filename.</param>
/// <param name="ct">Cancellation token.</param>
/// <returns>Stream containing the package.</returns>
Task<Stream> DownloadPackageAsync(string filename, CancellationToken ct = default);
}
/// <summary>
/// Package metadata parsed from primary.xml.
/// </summary>
public sealed record RpmPackageMetadata
{
/// <summary>Package name.</summary>
public required string Name { get; init; }
/// <summary>Architecture.</summary>
public required string Arch { get; init; }
/// <summary>Epoch (0 if not specified).</summary>
public int Epoch { get; init; }
/// <summary>Version.</summary>
public required string Version { get; init; }
/// <summary>Release.</summary>
public required string Release { get; init; }
/// <summary>Package filename.</summary>
public required string Filename { get; init; }
/// <summary>Package size.</summary>
public long Size { get; init; }
/// <summary>SHA-256 checksum.</summary>
public required string Checksum { get; init; }
/// <summary>Source RPM filename.</summary>
public string? SourceRpm { get; init; }
/// <summary>Package summary.</summary>
public string? Summary { get; init; }
/// <summary>Package description.</summary>
public string? Description { get; init; }
/// <summary>Build timestamp.</summary>
public DateTimeOffset? BuildTime { get; init; }
}

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// -----------------------------------------------------------------------------
// RpmCorpusConnector.cs
// Sprint: SPRINT_20251226_012_BINIDX_backport_handling
// Task: BACKPORT-14 — Create RpmCorpusConnector for RHEL/Fedora/CentOS
// -----------------------------------------------------------------------------
using System.Runtime.CompilerServices;
using Microsoft.Extensions.Logging;
using StellaOps.BinaryIndex.Core.Models;
using StellaOps.BinaryIndex.Core.Services;
using StellaOps.BinaryIndex.Corpus;
namespace StellaOps.BinaryIndex.Corpus.Rpm;
/// <summary>
/// RPM-based corpus connector for RHEL, Fedora, CentOS, Rocky, AlmaLinux.
/// </summary>
public sealed class RpmCorpusConnector : IBinaryCorpusConnector
{
private readonly IRpmPackageSource _packageSource;
private readonly RpmPackageExtractor _extractor;
private readonly IBinaryFeatureExtractor _featureExtractor;
private readonly ICorpusSnapshotRepository _snapshotRepo;
private readonly ILogger<RpmCorpusConnector> _logger;
public string ConnectorId => "rpm";
public string[] SupportedDistros => ["rhel", "fedora", "centos", "rocky", "almalinux"];
public RpmCorpusConnector(
IRpmPackageSource packageSource,
RpmPackageExtractor extractor,
IBinaryFeatureExtractor featureExtractor,
ICorpusSnapshotRepository snapshotRepo,
ILogger<RpmCorpusConnector> logger)
{
_packageSource = packageSource;
_extractor = extractor;
_featureExtractor = featureExtractor;
_snapshotRepo = snapshotRepo;
_logger = logger;
}
public async Task<CorpusSnapshot> FetchSnapshotAsync(CorpusQuery query, CancellationToken ct = default)
{
_logger.LogInformation(
"Fetching RPM corpus snapshot for {Distro} {Release}/{Architecture}",
query.Distro, query.Release, query.Architecture);
// Check if we already have a snapshot for this query
var existing = await _snapshotRepo.FindByKeyAsync(
query.Distro,
query.Release,
query.Architecture,
ct);
if (existing != null)
{
_logger.LogInformation("Using existing snapshot {SnapshotId}", existing.Id);
return existing;
}
// Fetch repodata/primary.xml to compute metadata digest
var packages = await _packageSource.FetchPackageIndexAsync(
query.Distro,
query.Release,
query.Architecture,
ct);
var packageList = packages.ToList();
var metadataDigest = ComputeMetadataDigest(packageList);
var snapshot = new CorpusSnapshot(
Id: Guid.NewGuid(),
Distro: query.Distro,
Release: query.Release,
Architecture: query.Architecture,
MetadataDigest: metadataDigest,
CapturedAt: DateTimeOffset.UtcNow);
await _snapshotRepo.CreateAsync(snapshot, ct);
_logger.LogInformation(
"Created RPM corpus snapshot {SnapshotId} with {PackageCount} packages",
snapshot.Id, packageList.Count);
return snapshot;
}
public async IAsyncEnumerable<PackageInfo> ListPackagesAsync(
CorpusSnapshot snapshot,
[EnumeratorCancellation] CancellationToken ct = default)
{
_logger.LogDebug("Listing packages for snapshot {SnapshotId}", snapshot.Id);
var packages = await _packageSource.FetchPackageIndexAsync(
snapshot.Distro,
snapshot.Release,
snapshot.Architecture,
ct);
foreach (var pkg in packages)
{
yield return new PackageInfo(
Name: pkg.Name,
Version: $"{pkg.Version}-{pkg.Release}",
SourcePackage: pkg.SourceRpm ?? pkg.Name,
Architecture: pkg.Arch,
Filename: pkg.Filename,
Size: pkg.Size,
Sha256: pkg.Checksum);
}
}
public async IAsyncEnumerable<ExtractedBinary> ExtractBinariesAsync(
PackageInfo pkg,
[EnumeratorCancellation] CancellationToken ct = default)
{
_logger.LogDebug("Extracting binaries from RPM {Package} {Version}", pkg.Name, pkg.Version);
Stream? rpmStream = null;
try
{
// Download the .rpm package
rpmStream = await _packageSource.DownloadPackageAsync(pkg.Filename, ct);
// Extract binaries using RpmPackageExtractor
var extractedBinaries = await _extractor.ExtractBinariesAsync(rpmStream, pkg, ct);
foreach (var binary in extractedBinaries)
{
yield return new ExtractedBinary(
Identity: binary.Identity,
PathInPackage: binary.FilePath,
Package: pkg);
}
}
finally
{
if (rpmStream != null)
{
await rpmStream.DisposeAsync();
}
}
}
private static string ComputeMetadataDigest(IEnumerable<RpmPackageMetadata> packages)
{
var combined = string.Join("|", packages
.OrderBy(p => p.Name)
.Select(p => $"{p.Name}:{p.Epoch}:{p.Version}-{p.Release}:{p.Checksum}"));
using var sha256 = System.Security.Cryptography.SHA256.Create();
var hash = sha256.ComputeHash(System.Text.Encoding.UTF8.GetBytes(combined));
return Convert.ToHexString(hash).ToLowerInvariant();
}
}

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// -----------------------------------------------------------------------------
// RpmPackageExtractor.cs
// Sprint: SPRINT_20251226_012_BINIDX_backport_handling
// Task: BACKPORT-14 — Create RpmCorpusConnector for RHEL/Fedora/CentOS
// -----------------------------------------------------------------------------
using Microsoft.Extensions.Logging;
using SharpCompress.Archives;
using SharpCompress.Compressors.Xz;
using SharpCompress.Readers.Cpio;
using StellaOps.BinaryIndex.Core.Models;
using StellaOps.BinaryIndex.Core.Services;
using StellaOps.BinaryIndex.Corpus;
namespace StellaOps.BinaryIndex.Corpus.Rpm;
/// <summary>
/// Extracts binaries from RPM packages.
/// </summary>
public sealed class RpmPackageExtractor
{
private readonly IBinaryFeatureExtractor _featureExtractor;
private readonly ILogger<RpmPackageExtractor> _logger;
// ELF magic bytes
private static readonly byte[] ElfMagic = [0x7F, 0x45, 0x4C, 0x46];
// RPM magic bytes
private static readonly byte[] RpmMagic = [0xED, 0xAB, 0xEE, 0xDB];
public RpmPackageExtractor(
IBinaryFeatureExtractor featureExtractor,
ILogger<RpmPackageExtractor> logger)
{
_featureExtractor = featureExtractor;
_logger = logger;
}
/// <summary>
/// Extracts ELF binaries from an RPM package.
/// </summary>
/// <param name="rpmStream">Stream containing the .rpm package.</param>
/// <param name="pkg">Package metadata.</param>
/// <param name="ct">Cancellation token.</param>
/// <returns>Extracted binaries with identity information.</returns>
public async Task<IReadOnlyList<ExtractedBinaryInfo>> ExtractBinariesAsync(
Stream rpmStream,
PackageInfo pkg,
CancellationToken ct = default)
{
var results = new List<ExtractedBinaryInfo>();
try
{
// RPM structure: lead + signature header + header + payload (cpio.xz/cpio.gz/cpio.zstd)
var payloadStream = await ExtractPayloadAsync(rpmStream, ct);
if (payloadStream == null)
{
_logger.LogWarning("Could not extract payload from RPM {Package}", pkg.Name);
return results;
}
using var reader = CpioReader.Open(payloadStream);
while (reader.MoveToNextEntry())
{
ct.ThrowIfCancellationRequested();
if (reader.Entry.IsDirectory)
continue;
using var entryStream = reader.OpenEntryStream();
using var ms = new MemoryStream();
await entryStream.CopyToAsync(ms, ct);
ms.Position = 0;
if (!IsElfBinary(ms))
{
continue;
}
ms.Position = 0;
try
{
var identity = await _featureExtractor.ExtractIdentityAsync(ms, reader.Entry.Key ?? "", ct);
results.Add(new ExtractedBinaryInfo(identity, reader.Entry.Key ?? ""));
}
catch (Exception ex)
{
_logger.LogWarning(ex, "Failed to extract identity from {File} in RPM {Package}",
reader.Entry.Key, pkg.Name);
}
}
}
catch (Exception ex)
{
_logger.LogError(ex, "Failed to extract binaries from RPM package {Package}", pkg.Name);
}
return results;
}
private async Task<Stream?> ExtractPayloadAsync(Stream rpmStream, CancellationToken ct)
{
// Skip RPM lead (96 bytes)
var lead = new byte[96];
var read = await rpmStream.ReadAsync(lead.AsMemory(0, 96), ct);
if (read != 96 || !lead.AsSpan(0, 4).SequenceEqual(RpmMagic))
{
_logger.LogWarning("Invalid RPM lead");
return null;
}
// Skip signature header (aligned to 8 bytes)
var sigHeader = await SkipHeaderAsync(rpmStream, ct);
if (sigHeader < 0)
{
_logger.LogWarning("Failed to skip signature header");
return null;
}
// Skip main header
var mainHeader = await SkipHeaderAsync(rpmStream, ct);
if (mainHeader < 0)
{
_logger.LogWarning("Failed to skip main header");
return null;
}
// The rest is the payload (compressed cpio)
var payloadMs = new MemoryStream();
await rpmStream.CopyToAsync(payloadMs, ct);
payloadMs.Position = 0;
// Try to decompress (xz is most common for modern RPMs)
try
{
var xzStream = new XZStream(payloadMs);
var decompressed = new MemoryStream();
await xzStream.CopyToAsync(decompressed, ct);
decompressed.Position = 0;
return decompressed;
}
catch
{
// Try other compression formats or return as-is
payloadMs.Position = 0;
return payloadMs;
}
}
private static async Task<long> SkipHeaderAsync(Stream stream, CancellationToken ct)
{
// RPM header magic: 8D AD E8 01
var headerMagic = new byte[8];
var read = await stream.ReadAsync(headerMagic.AsMemory(0, 8), ct);
if (read != 8)
return -1;
// Header index entries count (4 bytes, big-endian)
var indexCount = (headerMagic[4] << 24) | (headerMagic[5] << 16) | (headerMagic[6] << 8) | headerMagic[7];
// Read data size (4 bytes, big-endian)
var dataSizeBytes = new byte[4];
read = await stream.ReadAsync(dataSizeBytes.AsMemory(0, 4), ct);
if (read != 4)
return -1;
var dataSize = (dataSizeBytes[0] << 24) | (dataSizeBytes[1] << 16) | (dataSizeBytes[2] << 8) | dataSizeBytes[3];
// Skip index entries (16 bytes each) and data
var toSkip = (indexCount * 16) + dataSize;
// Align to 8 bytes
var position = stream.Position + toSkip;
var padding = (8 - (position % 8)) % 8;
toSkip += (int)padding;
var buffer = new byte[toSkip];
read = await stream.ReadAsync(buffer.AsMemory(0, toSkip), ct);
if (read != toSkip)
return -1;
return toSkip;
}
private static bool IsElfBinary(Stream stream)
{
if (stream.Length < 4)
return false;
var buffer = new byte[4];
var read = stream.Read(buffer, 0, 4);
stream.Position = 0;
return read == 4 && buffer.AsSpan().SequenceEqual(ElfMagic);
}
}
/// <summary>
/// Information about an extracted binary.
/// </summary>
public sealed record ExtractedBinaryInfo(BinaryIdentity Identity, string FilePath);

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@@ -0,0 +1,21 @@
<Project Sdk="Microsoft.NET.Sdk">
<PropertyGroup>
<TargetFramework>net10.0</TargetFramework>
<ImplicitUsings>enable</ImplicitUsings>
<Nullable>enable</Nullable>
<LangVersion>preview</LangVersion>
<GenerateDocumentationFile>true</GenerateDocumentationFile>
</PropertyGroup>
<ItemGroup>
<PackageReference Include="SharpCompress" Version="0.38.0" />
<PackageReference Include="Microsoft.Extensions.Logging.Abstractions" Version="10.0.0" />
<PackageReference Include="Microsoft.Extensions.Http" Version="10.0.0" />
</ItemGroup>
<ItemGroup>
<ProjectReference Include="..\StellaOps.BinaryIndex.Core\StellaOps.BinaryIndex.Core.csproj" />
<ProjectReference Include="..\StellaOps.BinaryIndex.Corpus\StellaOps.BinaryIndex.Corpus.csproj" />
<ProjectReference Include="..\StellaOps.BinaryIndex.FixIndex\StellaOps.BinaryIndex.FixIndex.csproj" />
</ItemGroup>
</Project>

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using System.Text.RegularExpressions;
using StellaOps.BinaryIndex.FixIndex.Models;
namespace StellaOps.BinaryIndex.FixIndex.Parsers;
/// <summary>
/// Parses RPM spec file changelog sections for CVE mentions.
/// </summary>
/// <remarks>
/// RPM changelog format:
/// %changelog
/// * Mon Jan 01 2024 Packager &lt;email&gt; - 1.2.3-4
/// - Fix CVE-2024-1234
/// </remarks>
public sealed partial class RpmChangelogParser : IChangelogParser
{
[GeneratedRegex(@"\bCVE-\d{4}-\d{4,7}\b", RegexOptions.Compiled)]
private static partial Regex CvePatternRegex();
[GeneratedRegex(@"^\*\s+\w{3}\s+\w{3}\s+\d{1,2}\s+\d{4}\s+(.+?)\s+-\s+(\S+)", RegexOptions.Compiled)]
private static partial Regex EntryHeaderPatternRegex();
[GeneratedRegex(@"^%changelog\s*$", RegexOptions.Compiled | RegexOptions.IgnoreCase)]
private static partial Regex ChangelogStartPatternRegex();
[GeneratedRegex(@"^%\w+", RegexOptions.Compiled)]
private static partial Regex SectionStartPatternRegex();
/// <summary>
/// Parses the top entry of an RPM spec changelog for CVE mentions.
/// </summary>
public IEnumerable<FixEvidence> ParseTopEntry(
string specContent,
string distro,
string release,
string sourcePkg)
{
if (string.IsNullOrWhiteSpace(specContent))
yield break;
var lines = specContent.Split('\n');
var inChangelog = false;
var inFirstEntry = false;
string? currentVersion = null;
var entryLines = new List<string>();
foreach (var line in lines)
{
// Detect %changelog start
if (ChangelogStartPatternRegex().IsMatch(line))
{
inChangelog = true;
continue;
}
if (!inChangelog)
continue;
// Exit on new section (e.g., %files, %prep)
if (SectionStartPatternRegex().IsMatch(line) && !ChangelogStartPatternRegex().IsMatch(line))
break;
// Detect entry header: * Day Mon DD YYYY Author <email> - version
var headerMatch = EntryHeaderPatternRegex().Match(line);
if (headerMatch.Success)
{
if (inFirstEntry)
{
// We've hit the second entry, stop processing
break;
}
inFirstEntry = true;
currentVersion = headerMatch.Groups[2].Value;
entryLines.Add(line);
continue;
}
if (inFirstEntry)
{
entryLines.Add(line);
}
}
if (currentVersion == null || entryLines.Count == 0)
yield break;
var entryText = string.Join('\n', entryLines);
var cves = CvePatternRegex().Matches(entryText)
.Select(m => m.Value)
.Distinct()
.ToList();
foreach (var cve in cves)
{
yield return new FixEvidence
{
Distro = distro,
Release = release,
SourcePkg = sourcePkg,
CveId = cve,
State = FixState.Fixed,
FixedVersion = currentVersion,
Method = FixMethod.Changelog,
Confidence = 0.75m, // RPM changelogs are less structured than Debian
Evidence = new ChangelogEvidence
{
File = "*.spec",
Version = currentVersion,
Excerpt = entryText.Length > 2000 ? entryText[..2000] : entryText,
LineNumber = null
},
CreatedAt = DateTimeOffset.UtcNow
};
}
}
/// <summary>
/// Parses the full RPM spec changelog for all CVE mentions with their versions.
/// </summary>
public IEnumerable<FixEvidence> ParseAllEntries(
string specContent,
string distro,
string release,
string sourcePkg)
{
if (string.IsNullOrWhiteSpace(specContent))
yield break;
var lines = specContent.Split('\n');
var inChangelog = false;
string? currentVersion = null;
var currentEntry = new List<string>();
foreach (var line in lines)
{
// Detect %changelog start
if (ChangelogStartPatternRegex().IsMatch(line))
{
inChangelog = true;
continue;
}
if (!inChangelog)
continue;
// Exit on new section
if (SectionStartPatternRegex().IsMatch(line) && !ChangelogStartPatternRegex().IsMatch(line))
{
// Process last entry
if (currentVersion != null && currentEntry.Count > 0)
{
foreach (var fix in ExtractCvesFromEntry(currentEntry, currentVersion, distro, release, sourcePkg))
yield return fix;
}
break;
}
// Detect entry header
var headerMatch = EntryHeaderPatternRegex().Match(line);
if (headerMatch.Success)
{
// Process previous entry
if (currentVersion != null && currentEntry.Count > 0)
{
foreach (var fix in ExtractCvesFromEntry(currentEntry, currentVersion, distro, release, sourcePkg))
yield return fix;
}
currentVersion = headerMatch.Groups[2].Value;
currentEntry = [line];
continue;
}
if (currentVersion != null)
{
currentEntry.Add(line);
}
}
// Process final entry if exists
if (currentVersion != null && currentEntry.Count > 0)
{
foreach (var fix in ExtractCvesFromEntry(currentEntry, currentVersion, distro, release, sourcePkg))
yield return fix;
}
}
private IEnumerable<FixEvidence> ExtractCvesFromEntry(
List<string> entryLines,
string version,
string distro,
string release,
string sourcePkg)
{
var entryText = string.Join('\n', entryLines);
var cves = CvePatternRegex().Matches(entryText)
.Select(m => m.Value)
.Distinct();
foreach (var cve in cves)
{
yield return new FixEvidence
{
Distro = distro,
Release = release,
SourcePkg = sourcePkg,
CveId = cve,
State = FixState.Fixed,
FixedVersion = version,
Method = FixMethod.Changelog,
Confidence = 0.75m,
Evidence = new ChangelogEvidence
{
File = "*.spec",
Version = version,
Excerpt = entryText.Length > 2000 ? entryText[..2000] : entryText,
LineNumber = null
},
CreatedAt = DateTimeOffset.UtcNow
};
}
}
}

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using StellaOps.BinaryIndex.FixIndex.Models;
namespace StellaOps.BinaryIndex.FixIndex.Repositories;
/// <summary>
/// Repository interface for CVE fix index operations.
/// </summary>
public interface IFixIndexRepository
{
/// <summary>
/// Gets the fix status for a specific CVE/package/distro combination.
/// </summary>
/// <param name="distro">Distribution (debian, ubuntu, alpine, rhel)</param>
/// <param name="release">Release codename (bookworm, jammy, v3.19)</param>
/// <param name="sourcePkg">Source package name</param>
/// <param name="cveId">CVE identifier</param>
/// <param name="cancellationToken">Cancellation token</param>
/// <returns>Fix status if found, null otherwise</returns>
Task<FixIndexEntry?> GetFixStatusAsync(
string distro,
string release,
string sourcePkg,
string cveId,
CancellationToken cancellationToken = default);
/// <summary>
/// Gets all fix statuses for a package.
/// </summary>
Task<IReadOnlyList<FixIndexEntry>> GetFixStatusesForPackageAsync(
string distro,
string release,
string sourcePkg,
CancellationToken cancellationToken = default);
/// <summary>
/// Gets all known fix locations for a CVE across distros.
/// </summary>
Task<IReadOnlyList<FixIndexEntry>> GetFixLocationsForCveAsync(
string cveId,
CancellationToken cancellationToken = default);
/// <summary>
/// Upserts a fix index entry.
/// </summary>
Task<FixIndexEntry> UpsertAsync(
FixEvidence evidence,
CancellationToken cancellationToken = default);
/// <summary>
/// Batch upserts fix index entries.
/// </summary>
Task<int> UpsertBatchAsync(
IEnumerable<FixEvidence> evidenceList,
CancellationToken cancellationToken = default);
/// <summary>
/// Stores fix evidence for audit trail.
/// </summary>
Task<Guid> StoreEvidenceAsync(
FixEvidence evidence,
CancellationToken cancellationToken = default);
/// <summary>
/// Gets evidence by ID.
/// </summary>
Task<FixEvidenceRecord?> GetEvidenceAsync(
Guid evidenceId,
CancellationToken cancellationToken = default);
/// <summary>
/// Deletes all entries from a specific snapshot (for re-ingestion).
/// </summary>
Task<int> DeleteBySnapshotAsync(
Guid snapshotId,
CancellationToken cancellationToken = default);
}
/// <summary>
/// Fix index entry from the database.
/// </summary>
public sealed record FixIndexEntry
{
public required Guid Id { get; init; }
public required string Distro { get; init; }
public required string Release { get; init; }
public required string SourcePkg { get; init; }
public required string CveId { get; init; }
public required FixState State { get; init; }
public string? FixedVersion { get; init; }
public required FixMethod Method { get; init; }
public required decimal Confidence { get; init; }
public Guid? EvidenceId { get; init; }
public Guid? SnapshotId { get; init; }
public required DateTimeOffset IndexedAt { get; init; }
public required DateTimeOffset UpdatedAt { get; init; }
}
/// <summary>
/// Fix evidence record from the database.
/// </summary>
public sealed record FixEvidenceRecord
{
public required Guid Id { get; init; }
public required string EvidenceType { get; init; }
public string? SourceFile { get; init; }
public string? SourceSha256 { get; init; }
public string? Excerpt { get; init; }
public required string MetadataJson { get; init; }
public Guid? SnapshotId { get; init; }
public required DateTimeOffset CreatedAt { get; init; }
}

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using System.Runtime.CompilerServices;
using Microsoft.Extensions.Logging;
using StellaOps.BinaryIndex.FixIndex.Models;
using StellaOps.BinaryIndex.FixIndex.Parsers;
namespace StellaOps.BinaryIndex.FixIndex.Services;
/// <summary>
/// Default implementation of <see cref="IFixIndexBuilder"/>.
/// </summary>
public sealed class FixIndexBuilder : IFixIndexBuilder
{
private readonly ILogger<FixIndexBuilder> _logger;
private readonly DebianChangelogParser _debianParser;
private readonly PatchHeaderParser _patchParser;
private readonly AlpineSecfixesParser _alpineParser;
private readonly RpmChangelogParser _rpmParser;
public FixIndexBuilder(ILogger<FixIndexBuilder> logger)
{
_logger = logger ?? throw new ArgumentNullException(nameof(logger));
_debianParser = new DebianChangelogParser();
_patchParser = new PatchHeaderParser();
_alpineParser = new AlpineSecfixesParser();
_rpmParser = new RpmChangelogParser();
}
/// <inheritdoc />
public async IAsyncEnumerable<FixEvidence> BuildDebianIndexAsync(
DebianFixIndexRequest request,
[EnumeratorCancellation] CancellationToken cancellationToken = default)
{
ArgumentNullException.ThrowIfNull(request);
_logger.LogDebug(
"Building Debian fix index for {Distro}/{Release}/{Package}",
request.Distro, request.Release, request.SourcePkg);
var cvesSeen = new HashSet<string>();
// Parse changelog for CVE mentions
if (!string.IsNullOrWhiteSpace(request.Changelog))
{
foreach (var evidence in _debianParser.ParseTopEntry(
request.Changelog,
request.Distro,
request.Release,
request.SourcePkg))
{
if (cvesSeen.Add(evidence.CveId))
{
yield return evidence with { SnapshotId = request.SnapshotId };
}
}
}
// Parse patches for CVE mentions (DEP-3 format)
if (request.Patches != null && request.Patches.Count > 0 && !string.IsNullOrEmpty(request.Version))
{
var patchTuples = request.Patches
.Select(p => (p.Path, p.Content, p.Sha256));
foreach (var evidence in _patchParser.ParsePatches(
patchTuples,
request.Distro,
request.Release,
request.SourcePkg,
request.Version))
{
// Patches have higher confidence, so they can override changelog entries
if (cvesSeen.Add(evidence.CveId) || evidence.Confidence > 0.85m)
{
yield return evidence with { SnapshotId = request.SnapshotId };
}
}
}
await Task.CompletedTask; // Satisfy async requirement
}
/// <inheritdoc />
public async IAsyncEnumerable<FixEvidence> BuildAlpineIndexAsync(
AlpineFixIndexRequest request,
[EnumeratorCancellation] CancellationToken cancellationToken = default)
{
ArgumentNullException.ThrowIfNull(request);
_logger.LogDebug(
"Building Alpine fix index for {Release}/{Package}",
request.Release, request.SourcePkg);
foreach (var evidence in _alpineParser.Parse(
request.ApkBuild,
request.Distro,
request.Release,
request.SourcePkg))
{
yield return evidence with { SnapshotId = request.SnapshotId };
}
await Task.CompletedTask;
}
/// <inheritdoc />
public async IAsyncEnumerable<FixEvidence> BuildRpmIndexAsync(
RpmFixIndexRequest request,
[EnumeratorCancellation] CancellationToken cancellationToken = default)
{
ArgumentNullException.ThrowIfNull(request);
_logger.LogDebug(
"Building RPM fix index for {Distro}/{Release}/{Package}",
request.Distro, request.Release, request.SourcePkg);
// Parse spec file changelog
foreach (var evidence in _rpmParser.ParseAllEntries(
request.SpecContent,
request.Distro,
request.Release,
request.SourcePkg))
{
yield return evidence with { SnapshotId = request.SnapshotId };
}
await Task.CompletedTask;
}
}

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using StellaOps.BinaryIndex.FixIndex.Models;
namespace StellaOps.BinaryIndex.FixIndex.Services;
/// <summary>
/// Interface for building the CVE fix index from various sources.
/// </summary>
public interface IFixIndexBuilder
{
/// <summary>
/// Builds fix index entries for a Debian/Ubuntu package.
/// </summary>
/// <param name="request">The Debian build request.</param>
/// <param name="cancellationToken">Cancellation token.</param>
/// <returns>Fix evidence entries.</returns>
IAsyncEnumerable<FixEvidence> BuildDebianIndexAsync(
DebianFixIndexRequest request,
CancellationToken cancellationToken = default);
/// <summary>
/// Builds fix index entries for an Alpine package.
/// </summary>
/// <param name="request">The Alpine build request.</param>
/// <param name="cancellationToken">Cancellation token.</param>
/// <returns>Fix evidence entries.</returns>
IAsyncEnumerable<FixEvidence> BuildAlpineIndexAsync(
AlpineFixIndexRequest request,
CancellationToken cancellationToken = default);
/// <summary>
/// Builds fix index entries for an RPM package.
/// </summary>
/// <param name="request">The RPM build request.</param>
/// <param name="cancellationToken">Cancellation token.</param>
/// <returns>Fix evidence entries.</returns>
IAsyncEnumerable<FixEvidence> BuildRpmIndexAsync(
RpmFixIndexRequest request,
CancellationToken cancellationToken = default);
}
/// <summary>
/// Request for building Debian fix index.
/// </summary>
public sealed record DebianFixIndexRequest
{
/// <summary>Distribution (debian or ubuntu).</summary>
public required string Distro { get; init; }
/// <summary>Release codename (bookworm, jammy).</summary>
public required string Release { get; init; }
/// <summary>Source package name.</summary>
public required string SourcePkg { get; init; }
/// <summary>Changelog content.</summary>
public string? Changelog { get; init; }
/// <summary>Patches with path, content, and SHA-256.</summary>
public IReadOnlyList<PatchFile>? Patches { get; init; }
/// <summary>Package version for patch association.</summary>
public string? Version { get; init; }
/// <summary>Corpus snapshot ID.</summary>
public Guid? SnapshotId { get; init; }
}
/// <summary>
/// Request for building Alpine fix index.
/// </summary>
public sealed record AlpineFixIndexRequest
{
/// <summary>Distribution (always "alpine").</summary>
public string Distro => "alpine";
/// <summary>Release (v3.19, edge).</summary>
public required string Release { get; init; }
/// <summary>Source package name.</summary>
public required string SourcePkg { get; init; }
/// <summary>APKBUILD file content.</summary>
public required string ApkBuild { get; init; }
/// <summary>Corpus snapshot ID.</summary>
public Guid? SnapshotId { get; init; }
}
/// <summary>
/// Request for building RPM fix index.
/// </summary>
public sealed record RpmFixIndexRequest
{
/// <summary>Distribution (rhel, fedora, centos, rocky, alma).</summary>
public required string Distro { get; init; }
/// <summary>Release version (9, 39, etc.).</summary>
public required string Release { get; init; }
/// <summary>Source package name.</summary>
public required string SourcePkg { get; init; }
/// <summary>Spec file content.</summary>
public required string SpecContent { get; init; }
/// <summary>Corpus snapshot ID.</summary>
public Guid? SnapshotId { get; init; }
}
/// <summary>
/// Represents a patch file with content.
/// </summary>
public sealed record PatchFile
{
/// <summary>Relative path to the patch file.</summary>
public required string Path { get; init; }
/// <summary>Content of the patch file.</summary>
public required string Content { get; init; }
/// <summary>SHA-256 hash of the patch content.</summary>
public required string Sha256 { get; init; }
}

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-- =============================================================================
-- 003_create_fix_index_tables.sql
-- Sprint: SPRINT_20251226_012_BINIDX_backport_handling
-- Tasks: BACKPORT-01, BACKPORT-02
-- Description: Creates CVE fix index tables for patch-aware backport handling
-- =============================================================================
-- -----------------------------------------------------------------------------
-- fix_evidence: Audit trail for how fix status was determined
-- -----------------------------------------------------------------------------
CREATE TABLE IF NOT EXISTS binaries.fix_evidence (
id UUID PRIMARY KEY DEFAULT gen_random_uuid(),
tenant_id TEXT NOT NULL DEFAULT binaries_app.require_current_tenant(),
-- Evidence type: changelog, patch_header, security_feed, upstream_match
evidence_type TEXT NOT NULL,
-- Source file (e.g., "debian/changelog", "alpine/APKBUILD", "openssl.spec")
source_file TEXT,
-- SHA-256 of source file for integrity
source_sha256 TEXT,
-- Truncated excerpt of relevant content (max 2KB)
excerpt TEXT,
-- Structured metadata as JSONB for type-specific fields
metadata JSONB NOT NULL DEFAULT '{}',
-- Corpus snapshot this evidence came from
snapshot_id UUID,
-- Timestamps
created_at TIMESTAMPTZ NOT NULL DEFAULT now(),
CONSTRAINT fix_evidence_type_check CHECK (evidence_type IN (
'changelog', 'patch_header', 'security_feed', 'upstream_match'
))
);
-- Enable RLS
ALTER TABLE binaries.fix_evidence ENABLE ROW LEVEL SECURITY;
CREATE POLICY tenant_isolation ON binaries.fix_evidence
USING (tenant_id = binaries_app.require_current_tenant());
-- Index for snapshot cleanup
CREATE INDEX IF NOT EXISTS idx_fix_evidence_snapshot
ON binaries.fix_evidence (tenant_id, snapshot_id);
-- -----------------------------------------------------------------------------
-- cve_fix_index: Patch-aware CVE fix status per distro/release/package
-- -----------------------------------------------------------------------------
CREATE TABLE IF NOT EXISTS binaries.cve_fix_index (
id UUID PRIMARY KEY DEFAULT gen_random_uuid(),
tenant_id TEXT NOT NULL DEFAULT binaries_app.require_current_tenant(),
-- Distribution coordinates
distro TEXT NOT NULL, -- debian, ubuntu, alpine, rhel, fedora, centos
release TEXT NOT NULL, -- bookworm, jammy, v3.19, 9
source_pkg TEXT NOT NULL, -- Source package name
-- CVE identification
cve_id TEXT NOT NULL, -- CVE-YYYY-NNNN
-- Fix status
state TEXT NOT NULL, -- fixed, vulnerable, not_affected, wontfix, unknown
fixed_version TEXT, -- Distro version string where fix was applied
-- How this status was determined
method TEXT NOT NULL, -- security_feed, changelog, patch_header, upstream_match
-- Confidence score (0.00-1.00)
-- security_feed: 0.99, patch_header: 0.90, changelog: 0.80, upstream_match: 0.85
confidence DECIMAL(3,2) NOT NULL,
-- Reference to evidence audit trail
evidence_id UUID REFERENCES binaries.fix_evidence(id),
-- Corpus snapshot this came from
snapshot_id UUID,
-- Timestamps
indexed_at TIMESTAMPTZ NOT NULL DEFAULT now(),
updated_at TIMESTAMPTZ NOT NULL DEFAULT now(),
-- Unique per distro/release/package/cve
CONSTRAINT cve_fix_index_unique UNIQUE (tenant_id, distro, release, source_pkg, cve_id),
-- State validation
CONSTRAINT cve_fix_state_check CHECK (state IN (
'fixed', 'vulnerable', 'not_affected', 'wontfix', 'unknown'
)),
-- Method validation
CONSTRAINT cve_fix_method_check CHECK (method IN (
'security_feed', 'changelog', 'patch_header', 'upstream_match'
)),
-- Confidence range validation
CONSTRAINT cve_fix_confidence_check CHECK (confidence >= 0.00 AND confidence <= 1.00)
);
-- Enable RLS
ALTER TABLE binaries.cve_fix_index ENABLE ROW LEVEL SECURITY;
CREATE POLICY tenant_isolation ON binaries.cve_fix_index
USING (tenant_id = binaries_app.require_current_tenant());
-- Primary lookup index: distro/release/package/cve
CREATE INDEX IF NOT EXISTS idx_cve_fix_lookup
ON binaries.cve_fix_index (tenant_id, distro, release, source_pkg, cve_id);
-- Index for CVE-centric queries (e.g., "where is CVE-X fixed?")
CREATE INDEX IF NOT EXISTS idx_cve_fix_by_cve
ON binaries.cve_fix_index (tenant_id, cve_id, distro, release);
-- Index for version-based queries
CREATE INDEX IF NOT EXISTS idx_cve_fix_by_version
ON binaries.cve_fix_index (tenant_id, distro, release, source_pkg, fixed_version);
-- Index for snapshot cleanup
CREATE INDEX IF NOT EXISTS idx_cve_fix_snapshot
ON binaries.cve_fix_index (tenant_id, snapshot_id);
-- Index for state filtering
CREATE INDEX IF NOT EXISTS idx_cve_fix_by_state
ON binaries.cve_fix_index (tenant_id, distro, release, state);
-- -----------------------------------------------------------------------------
-- fix_index_priority: Resolution priority when multiple sources conflict
-- Higher priority sources override lower priority sources
-- -----------------------------------------------------------------------------
CREATE TABLE IF NOT EXISTS binaries.fix_index_priority (
id UUID PRIMARY KEY DEFAULT gen_random_uuid(),
tenant_id TEXT NOT NULL DEFAULT binaries_app.require_current_tenant(),
-- Priority order (lower number = higher priority)
priority INTEGER NOT NULL,
-- Method type
method TEXT NOT NULL,
-- Description
description TEXT,
-- Active flag
is_active BOOLEAN NOT NULL DEFAULT true,
CONSTRAINT fix_index_priority_unique UNIQUE (tenant_id, method)
);
-- Enable RLS
ALTER TABLE binaries.fix_index_priority ENABLE ROW LEVEL SECURITY;
CREATE POLICY tenant_isolation ON binaries.fix_index_priority
USING (tenant_id = binaries_app.require_current_tenant());
-- -----------------------------------------------------------------------------
-- Insert default priorities
-- Security feeds are authoritative and override other sources
-- -----------------------------------------------------------------------------
-- Note: Default priorities will be inserted per-tenant on first use
-- -----------------------------------------------------------------------------
-- Comments for documentation
-- -----------------------------------------------------------------------------
COMMENT ON TABLE binaries.fix_evidence IS
'Audit trail for CVE fix determinations, storing excerpts and metadata for traceability';
COMMENT ON TABLE binaries.cve_fix_index IS
'Patch-aware CVE fix index enabling accurate vulnerability status despite version pinning';
COMMENT ON COLUMN binaries.cve_fix_index.confidence IS
'Confidence score: security_feed=0.99, patch_header=0.90, changelog=0.80, upstream_match=0.85';
COMMENT ON COLUMN binaries.cve_fix_index.method IS
'How fix status was determined: security_feed (OVAL/DSA), changelog, patch_header (DEP-3), upstream_match';

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using System.Text.Json;
using Npgsql;
using NpgsqlTypes;
using StellaOps.BinaryIndex.FixIndex.Models;
using StellaOps.BinaryIndex.FixIndex.Repositories;
namespace StellaOps.BinaryIndex.Persistence.Repositories;
/// <summary>
/// PostgreSQL implementation of <see cref="IFixIndexRepository"/>.
/// </summary>
public sealed class FixIndexRepository : IFixIndexRepository
{
private readonly BinaryIndexDataSource _dataSource;
private static readonly JsonSerializerOptions JsonOptions = new(JsonSerializerDefaults.Web)
{
PropertyNamingPolicy = JsonNamingPolicy.CamelCase
};
public FixIndexRepository(BinaryIndexDataSource dataSource)
{
_dataSource = dataSource ?? throw new ArgumentNullException(nameof(dataSource));
}
/// <inheritdoc />
public async Task<FixIndexEntry?> GetFixStatusAsync(
string distro,
string release,
string sourcePkg,
string cveId,
CancellationToken cancellationToken = default)
{
const string sql = """
SELECT id, distro, release, source_pkg, cve_id, state, fixed_version,
method, confidence, evidence_id, snapshot_id, indexed_at, updated_at
FROM binaries.cve_fix_index
WHERE distro = @distro AND release = @release
AND source_pkg = @sourcePkg AND cve_id = @cveId
""";
await using var conn = await _dataSource.OpenConnectionAsync(cancellationToken);
await using var cmd = new NpgsqlCommand(sql, conn);
cmd.Parameters.AddWithValue("distro", distro);
cmd.Parameters.AddWithValue("release", release);
cmd.Parameters.AddWithValue("sourcePkg", sourcePkg);
cmd.Parameters.AddWithValue("cveId", cveId);
await using var reader = await cmd.ExecuteReaderAsync(cancellationToken);
if (await reader.ReadAsync(cancellationToken))
{
return MapToFixIndexEntry(reader);
}
return null;
}
/// <inheritdoc />
public async Task<IReadOnlyList<FixIndexEntry>> GetFixStatusesForPackageAsync(
string distro,
string release,
string sourcePkg,
CancellationToken cancellationToken = default)
{
const string sql = """
SELECT id, distro, release, source_pkg, cve_id, state, fixed_version,
method, confidence, evidence_id, snapshot_id, indexed_at, updated_at
FROM binaries.cve_fix_index
WHERE distro = @distro AND release = @release AND source_pkg = @sourcePkg
ORDER BY cve_id
""";
await using var conn = await _dataSource.OpenConnectionAsync(cancellationToken);
await using var cmd = new NpgsqlCommand(sql, conn);
cmd.Parameters.AddWithValue("distro", distro);
cmd.Parameters.AddWithValue("release", release);
cmd.Parameters.AddWithValue("sourcePkg", sourcePkg);
var results = new List<FixIndexEntry>();
await using var reader = await cmd.ExecuteReaderAsync(cancellationToken);
while (await reader.ReadAsync(cancellationToken))
{
results.Add(MapToFixIndexEntry(reader));
}
return results;
}
/// <inheritdoc />
public async Task<IReadOnlyList<FixIndexEntry>> GetFixLocationsForCveAsync(
string cveId,
CancellationToken cancellationToken = default)
{
const string sql = """
SELECT id, distro, release, source_pkg, cve_id, state, fixed_version,
method, confidence, evidence_id, snapshot_id, indexed_at, updated_at
FROM binaries.cve_fix_index
WHERE cve_id = @cveId
ORDER BY distro, release, source_pkg
""";
await using var conn = await _dataSource.OpenConnectionAsync(cancellationToken);
await using var cmd = new NpgsqlCommand(sql, conn);
cmd.Parameters.AddWithValue("cveId", cveId);
var results = new List<FixIndexEntry>();
await using var reader = await cmd.ExecuteReaderAsync(cancellationToken);
while (await reader.ReadAsync(cancellationToken))
{
results.Add(MapToFixIndexEntry(reader));
}
return results;
}
/// <inheritdoc />
public async Task<FixIndexEntry> UpsertAsync(
FixEvidence evidence,
CancellationToken cancellationToken = default)
{
// First store evidence
var evidenceId = await StoreEvidenceAsync(evidence, cancellationToken);
const string sql = """
INSERT INTO binaries.cve_fix_index
(distro, release, source_pkg, cve_id, state, fixed_version, method, confidence, evidence_id, snapshot_id)
VALUES
(@distro, @release, @sourcePkg, @cveId, @state, @fixedVersion, @method, @confidence, @evidenceId, @snapshotId)
ON CONFLICT (tenant_id, distro, release, source_pkg, cve_id)
DO UPDATE SET
state = EXCLUDED.state,
fixed_version = EXCLUDED.fixed_version,
method = CASE
WHEN binaries.cve_fix_index.confidence < EXCLUDED.confidence THEN EXCLUDED.method
ELSE binaries.cve_fix_index.method
END,
confidence = GREATEST(binaries.cve_fix_index.confidence, EXCLUDED.confidence),
evidence_id = CASE
WHEN binaries.cve_fix_index.confidence < EXCLUDED.confidence THEN EXCLUDED.evidence_id
ELSE binaries.cve_fix_index.evidence_id
END,
snapshot_id = EXCLUDED.snapshot_id,
updated_at = now()
RETURNING id, distro, release, source_pkg, cve_id, state, fixed_version,
method, confidence, evidence_id, snapshot_id, indexed_at, updated_at
""";
await using var conn = await _dataSource.OpenConnectionAsync(cancellationToken);
await using var cmd = new NpgsqlCommand(sql, conn);
cmd.Parameters.AddWithValue("distro", evidence.Distro);
cmd.Parameters.AddWithValue("release", evidence.Release);
cmd.Parameters.AddWithValue("sourcePkg", evidence.SourcePkg);
cmd.Parameters.AddWithValue("cveId", evidence.CveId);
cmd.Parameters.AddWithValue("state", evidence.State.ToString().ToLowerInvariant());
cmd.Parameters.AddWithValue("fixedVersion", (object?)evidence.FixedVersion ?? DBNull.Value);
cmd.Parameters.AddWithValue("method", evidence.Method.ToString().ToLowerInvariant());
cmd.Parameters.AddWithValue("confidence", evidence.Confidence);
cmd.Parameters.AddWithValue("evidenceId", evidenceId);
cmd.Parameters.AddWithValue("snapshotId", (object?)evidence.SnapshotId ?? DBNull.Value);
await using var reader = await cmd.ExecuteReaderAsync(cancellationToken);
await reader.ReadAsync(cancellationToken);
return MapToFixIndexEntry(reader);
}
/// <inheritdoc />
public async Task<int> UpsertBatchAsync(
IEnumerable<FixEvidence> evidenceList,
CancellationToken cancellationToken = default)
{
var count = 0;
foreach (var evidence in evidenceList)
{
await UpsertAsync(evidence, cancellationToken);
count++;
}
return count;
}
/// <inheritdoc />
public async Task<Guid> StoreEvidenceAsync(
FixEvidence evidence,
CancellationToken cancellationToken = default)
{
var (evidenceType, sourceFile, excerpt, metadata) = MapEvidencePayload(evidence.Evidence);
const string sql = """
INSERT INTO binaries.fix_evidence
(evidence_type, source_file, excerpt, metadata, snapshot_id)
VALUES
(@evidenceType, @sourceFile, @excerpt, @metadata::jsonb, @snapshotId)
RETURNING id
""";
await using var conn = await _dataSource.OpenConnectionAsync(cancellationToken);
await using var cmd = new NpgsqlCommand(sql, conn);
cmd.Parameters.AddWithValue("evidenceType", evidenceType);
cmd.Parameters.AddWithValue("sourceFile", (object?)sourceFile ?? DBNull.Value);
cmd.Parameters.AddWithValue("excerpt", (object?)excerpt ?? DBNull.Value);
cmd.Parameters.AddWithValue("metadata", NpgsqlDbType.Jsonb, metadata);
cmd.Parameters.AddWithValue("snapshotId", (object?)evidence.SnapshotId ?? DBNull.Value);
var result = await cmd.ExecuteScalarAsync(cancellationToken);
return (Guid)result!;
}
/// <inheritdoc />
public async Task<FixEvidenceRecord?> GetEvidenceAsync(
Guid evidenceId,
CancellationToken cancellationToken = default)
{
const string sql = """
SELECT id, evidence_type, source_file, source_sha256, excerpt, metadata::text, snapshot_id, created_at
FROM binaries.fix_evidence
WHERE id = @id
""";
await using var conn = await _dataSource.OpenConnectionAsync(cancellationToken);
await using var cmd = new NpgsqlCommand(sql, conn);
cmd.Parameters.AddWithValue("id", evidenceId);
await using var reader = await cmd.ExecuteReaderAsync(cancellationToken);
if (await reader.ReadAsync(cancellationToken))
{
return new FixEvidenceRecord
{
Id = reader.GetGuid(0),
EvidenceType = reader.GetString(1),
SourceFile = reader.IsDBNull(2) ? null : reader.GetString(2),
SourceSha256 = reader.IsDBNull(3) ? null : reader.GetString(3),
Excerpt = reader.IsDBNull(4) ? null : reader.GetString(4),
MetadataJson = reader.GetString(5),
SnapshotId = reader.IsDBNull(6) ? null : reader.GetGuid(6),
CreatedAt = reader.GetDateTime(7)
};
}
return null;
}
/// <inheritdoc />
public async Task<int> DeleteBySnapshotAsync(
Guid snapshotId,
CancellationToken cancellationToken = default)
{
const string sql = """
WITH deleted_index AS (
DELETE FROM binaries.cve_fix_index WHERE snapshot_id = @snapshotId RETURNING 1
),
deleted_evidence AS (
DELETE FROM binaries.fix_evidence WHERE snapshot_id = @snapshotId RETURNING 1
)
SELECT (SELECT COUNT(*) FROM deleted_index) + (SELECT COUNT(*) FROM deleted_evidence)
""";
await using var conn = await _dataSource.OpenConnectionAsync(cancellationToken);
await using var cmd = new NpgsqlCommand(sql, conn);
cmd.Parameters.AddWithValue("snapshotId", snapshotId);
var result = await cmd.ExecuteScalarAsync(cancellationToken);
return Convert.ToInt32(result);
}
private static FixIndexEntry MapToFixIndexEntry(NpgsqlDataReader reader)
{
return new FixIndexEntry
{
Id = reader.GetGuid(0),
Distro = reader.GetString(1),
Release = reader.GetString(2),
SourcePkg = reader.GetString(3),
CveId = reader.GetString(4),
State = Enum.Parse<FixState>(reader.GetString(5), ignoreCase: true),
FixedVersion = reader.IsDBNull(6) ? null : reader.GetString(6),
Method = ParseFixMethod(reader.GetString(7)),
Confidence = reader.GetDecimal(8),
EvidenceId = reader.IsDBNull(9) ? null : reader.GetGuid(9),
SnapshotId = reader.IsDBNull(10) ? null : reader.GetGuid(10),
IndexedAt = reader.GetDateTime(11),
UpdatedAt = reader.GetDateTime(12)
};
}
private static FixMethod ParseFixMethod(string method)
{
return method.ToLowerInvariant() switch
{
"security_feed" => FixMethod.SecurityFeed,
"changelog" => FixMethod.Changelog,
"patch_header" => FixMethod.PatchHeader,
"upstream_match" => FixMethod.UpstreamPatchMatch,
_ => FixMethod.Changelog
};
}
private static (string Type, string? File, string? Excerpt, string Metadata) MapEvidencePayload(FixEvidencePayload payload)
{
return payload switch
{
ChangelogEvidence cl => (
"changelog",
cl.File,
cl.Excerpt,
JsonSerializer.Serialize(new { cl.Version, cl.LineNumber }, JsonOptions)
),
PatchHeaderEvidence ph => (
"patch_header",
ph.PatchPath,
ph.HeaderExcerpt,
JsonSerializer.Serialize(new { ph.PatchSha256 }, JsonOptions)
),
SecurityFeedEvidence sf => (
"security_feed",
null,
null,
JsonSerializer.Serialize(new { sf.FeedId, sf.EntryId, sf.PublishedAt }, JsonOptions)
),
_ => ("unknown", null, null, "{}")
};
}
}

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// -----------------------------------------------------------------------------
// FeatureExtractorTests.cs
// Sprint: SPRINT_20251226_011_BINIDX_known_build_catalog
// Task: BINCAT-17 - Unit tests for identity extraction (ELF, PE, Mach-O)
// Description: Unit tests for binary feature extraction across all formats
// -----------------------------------------------------------------------------
using FluentAssertions;
using StellaOps.BinaryIndex.Core.Models;
using StellaOps.BinaryIndex.Core.Services;
using Xunit;
namespace StellaOps.BinaryIndex.Core.Tests;
public class ElfFeatureExtractorTests
{
private readonly ElfFeatureExtractor _extractor = new();
[Fact]
public void CanExtract_WithElfMagic_ReturnsTrue()
{
// Arrange: ELF magic bytes
var elfBytes = new byte[] { 0x7F, 0x45, 0x4C, 0x46, 0x02, 0x01, 0x01, 0x00 };
using var stream = new MemoryStream(elfBytes);
// Act
var result = _extractor.CanExtract(stream);
// Assert
result.Should().BeTrue();
}
[Fact]
public void CanExtract_WithNonElfMagic_ReturnsFalse()
{
// Arrange: Not ELF
var notElf = new byte[] { 0x4D, 0x5A, 0x90, 0x00 }; // PE magic
using var stream = new MemoryStream(notElf);
// Act
var result = _extractor.CanExtract(stream);
// Assert
result.Should().BeFalse();
}
[Fact]
public void CanExtract_WithEmptyStream_ReturnsFalse()
{
// Arrange
using var stream = new MemoryStream();
// Act
var result = _extractor.CanExtract(stream);
// Assert
result.Should().BeFalse();
}
[Fact]
public async Task ExtractMetadataAsync_WithValidElf64_ReturnsCorrectMetadata()
{
// Arrange: Minimal ELF64 header (little-endian, x86_64, executable)
var elfHeader = CreateMinimalElf64Header(
machine: 0x3E, // x86_64
type: 0x02, // ET_EXEC
osabi: 0x03); // Linux
using var stream = new MemoryStream(elfHeader);
// Act
var metadata = await _extractor.ExtractMetadataAsync(stream);
// Assert
metadata.Format.Should().Be(BinaryFormat.Elf);
metadata.Architecture.Should().Be("x86_64");
metadata.Type.Should().Be(BinaryType.Executable);
}
[Fact]
public async Task ExtractMetadataAsync_WithElf64SharedLib_ReturnsSharedLibrary()
{
// Arrange: ELF64 shared library
var elfHeader = CreateMinimalElf64Header(
machine: 0x3E,
type: 0x03, // ET_DYN (shared object)
osabi: 0x03);
using var stream = new MemoryStream(elfHeader);
// Act
var metadata = await _extractor.ExtractMetadataAsync(stream);
// Assert
metadata.Type.Should().Be(BinaryType.SharedLibrary);
}
[Fact]
public async Task ExtractMetadataAsync_WithAarch64_ReturnsCorrectArchitecture()
{
// Arrange: ELF64 aarch64
var elfHeader = CreateMinimalElf64Header(
machine: 0xB7, // aarch64
type: 0x02,
osabi: 0x03);
using var stream = new MemoryStream(elfHeader);
// Act
var metadata = await _extractor.ExtractMetadataAsync(stream);
// Assert
metadata.Architecture.Should().Be("aarch64");
}
[Fact]
public async Task ExtractIdentityAsync_ProducesConsistentBinaryKey()
{
// Arrange: Same ELF content
var elfHeader = CreateMinimalElf64Header(machine: 0x3E, type: 0x02, osabi: 0x03);
using var stream1 = new MemoryStream(elfHeader);
using var stream2 = new MemoryStream(elfHeader);
// Act
var identity1 = await _extractor.ExtractIdentityAsync(stream1);
var identity2 = await _extractor.ExtractIdentityAsync(stream2);
// Assert: Same content should produce same identity
identity1.BinaryKey.Should().Be(identity2.BinaryKey);
identity1.FileSha256.Should().Be(identity2.FileSha256);
}
private static byte[] CreateMinimalElf64Header(ushort machine, ushort type, byte osabi)
{
var header = new byte[64];
// ELF magic
header[0] = 0x7F;
header[1] = 0x45; // E
header[2] = 0x4C; // L
header[3] = 0x46; // F
// Class: 64-bit
header[4] = 0x02;
// Data: little-endian
header[5] = 0x01;
// Version
header[6] = 0x01;
// OS/ABI
header[7] = osabi;
// Type (little-endian)
BitConverter.GetBytes(type).CopyTo(header, 16);
// Machine (little-endian)
BitConverter.GetBytes(machine).CopyTo(header, 18);
return header;
}
}
public class PeFeatureExtractorTests
{
private readonly PeFeatureExtractor _extractor = new();
[Fact]
public void CanExtract_WithDosMagic_ReturnsTrue()
{
// Arrange: DOS/PE magic bytes
var peBytes = CreateMinimalPeHeader();
using var stream = new MemoryStream(peBytes);
// Act
var result = _extractor.CanExtract(stream);
// Assert
result.Should().BeTrue();
}
[Fact]
public void CanExtract_WithElfMagic_ReturnsFalse()
{
// Arrange: ELF magic
var elfBytes = new byte[] { 0x7F, 0x45, 0x4C, 0x46, 0x02, 0x01, 0x01, 0x00 };
using var stream = new MemoryStream(elfBytes);
// Act
var result = _extractor.CanExtract(stream);
// Assert
result.Should().BeFalse();
}
[Fact]
public async Task ExtractMetadataAsync_WithPe64_ReturnsCorrectMetadata()
{
// Arrange: PE32+ x86_64 executable
var peHeader = CreateMinimalPeHeader(machine: 0x8664, characteristics: 0x0002);
using var stream = new MemoryStream(peHeader);
// Act
var metadata = await _extractor.ExtractMetadataAsync(stream);
// Assert
metadata.Format.Should().Be(BinaryFormat.Pe);
metadata.Architecture.Should().Be("x86_64");
metadata.Type.Should().Be(BinaryType.Executable);
}
[Fact]
public async Task ExtractMetadataAsync_WithDll_ReturnsSharedLibrary()
{
// Arrange: PE DLL
var peHeader = CreateMinimalPeHeader(
machine: 0x8664,
characteristics: 0x2002); // IMAGE_FILE_DLL | IMAGE_FILE_EXECUTABLE_IMAGE
using var stream = new MemoryStream(peHeader);
// Act
var metadata = await _extractor.ExtractMetadataAsync(stream);
// Assert
metadata.Type.Should().Be(BinaryType.SharedLibrary);
}
[Fact]
public async Task ExtractMetadataAsync_WithX86_ReturnsCorrectArchitecture()
{
// Arrange: PE32 x86
var peHeader = CreateMinimalPeHeader(machine: 0x014C, characteristics: 0x0002);
using var stream = new MemoryStream(peHeader);
// Act
var metadata = await _extractor.ExtractMetadataAsync(stream);
// Assert
metadata.Architecture.Should().Be("x86");
}
[Fact]
public async Task ExtractIdentityAsync_ProducesConsistentBinaryKey()
{
// Arrange: Same PE content
var peHeader = CreateMinimalPeHeader(machine: 0x8664, characteristics: 0x0002);
using var stream1 = new MemoryStream(peHeader);
using var stream2 = new MemoryStream(peHeader);
// Act
var identity1 = await _extractor.ExtractIdentityAsync(stream1);
var identity2 = await _extractor.ExtractIdentityAsync(stream2);
// Assert: Same content should produce same identity
identity1.BinaryKey.Should().Be(identity2.BinaryKey);
identity1.FileSha256.Should().Be(identity2.FileSha256);
}
private static byte[] CreateMinimalPeHeader(ushort machine = 0x8664, ushort characteristics = 0x0002)
{
var header = new byte[512];
// DOS header
header[0] = 0x4D; // M
header[1] = 0x5A; // Z
// e_lfanew at offset 0x3C
BitConverter.GetBytes(0x80).CopyTo(header, 0x3C);
// PE signature at offset 0x80
header[0x80] = 0x50; // P
header[0x81] = 0x45; // E
header[0x82] = 0x00;
header[0x83] = 0x00;
// COFF header at 0x84
BitConverter.GetBytes(machine).CopyTo(header, 0x84); // Machine
BitConverter.GetBytes((ushort)0).CopyTo(header, 0x86); // NumberOfSections
BitConverter.GetBytes((uint)0).CopyTo(header, 0x88); // TimeDateStamp
BitConverter.GetBytes((uint)0).CopyTo(header, 0x8C); // PointerToSymbolTable
BitConverter.GetBytes((uint)0).CopyTo(header, 0x90); // NumberOfSymbols
BitConverter.GetBytes((ushort)240).CopyTo(header, 0x94); // SizeOfOptionalHeader (PE32+)
BitConverter.GetBytes(characteristics).CopyTo(header, 0x96); // Characteristics
// Optional header magic at 0x98
BitConverter.GetBytes((ushort)0x20B).CopyTo(header, 0x98); // PE32+ magic
return header;
}
}
public class MachoFeatureExtractorTests
{
private readonly MachoFeatureExtractor _extractor = new();
[Fact]
public void CanExtract_WithMacho64Magic_ReturnsTrue()
{
// Arrange: Mach-O 64-bit magic
var machoBytes = new byte[] { 0xCF, 0xFA, 0xED, 0xFE }; // MH_MAGIC_64 little-endian
using var stream = new MemoryStream(machoBytes);
// Act
var result = _extractor.CanExtract(stream);
// Assert
result.Should().BeTrue();
}
[Fact]
public void CanExtract_WithFatBinaryMagic_ReturnsTrue()
{
// Arrange: Universal binary magic
var fatBytes = new byte[] { 0xCA, 0xFE, 0xBA, 0xBE }; // FAT_MAGIC
using var stream = new MemoryStream(fatBytes);
// Act
var result = _extractor.CanExtract(stream);
// Assert
result.Should().BeTrue();
}
[Fact]
public void CanExtract_WithElfMagic_ReturnsFalse()
{
// Arrange: ELF magic
var elfBytes = new byte[] { 0x7F, 0x45, 0x4C, 0x46, 0x02, 0x01, 0x01, 0x00 };
using var stream = new MemoryStream(elfBytes);
// Act
var result = _extractor.CanExtract(stream);
// Assert
result.Should().BeFalse();
}
[Fact]
public async Task ExtractMetadataAsync_WithMacho64Executable_ReturnsCorrectMetadata()
{
// Arrange: Mach-O 64-bit x86_64 executable
var machoHeader = CreateMinimalMacho64Header(
cpuType: 0x01000007, // CPU_TYPE_X86_64
fileType: 0x02); // MH_EXECUTE
using var stream = new MemoryStream(machoHeader);
// Act
var metadata = await _extractor.ExtractMetadataAsync(stream);
// Assert
metadata.Format.Should().Be(BinaryFormat.Macho);
metadata.Architecture.Should().Be("x86_64");
metadata.Type.Should().Be(BinaryType.Executable);
}
[Fact]
public async Task ExtractMetadataAsync_WithDylib_ReturnsSharedLibrary()
{
// Arrange: Mach-O dylib
var machoHeader = CreateMinimalMacho64Header(
cpuType: 0x01000007,
fileType: 0x06); // MH_DYLIB
using var stream = new MemoryStream(machoHeader);
// Act
var metadata = await _extractor.ExtractMetadataAsync(stream);
// Assert
metadata.Type.Should().Be(BinaryType.SharedLibrary);
}
[Fact]
public async Task ExtractMetadataAsync_WithArm64_ReturnsCorrectArchitecture()
{
// Arrange: Mach-O arm64
var machoHeader = CreateMinimalMacho64Header(
cpuType: 0x0100000C, // CPU_TYPE_ARM64
fileType: 0x02);
using var stream = new MemoryStream(machoHeader);
// Act
var metadata = await _extractor.ExtractMetadataAsync(stream);
// Assert
metadata.Architecture.Should().Be("aarch64");
}
[Fact]
public async Task ExtractIdentityAsync_ProducesConsistentBinaryKey()
{
// Arrange: Same Mach-O content
var machoHeader = CreateMinimalMacho64Header(cpuType: 0x01000007, fileType: 0x02);
using var stream1 = new MemoryStream(machoHeader);
using var stream2 = new MemoryStream(machoHeader);
// Act
var identity1 = await _extractor.ExtractIdentityAsync(stream1);
var identity2 = await _extractor.ExtractIdentityAsync(stream2);
// Assert: Same content should produce same identity
identity1.BinaryKey.Should().Be(identity2.BinaryKey);
identity1.FileSha256.Should().Be(identity2.FileSha256);
}
private static byte[] CreateMinimalMacho64Header(int cpuType, uint fileType)
{
var header = new byte[32 + 256]; // Mach-O 64 header + space for load commands
// Magic (little-endian)
header[0] = 0xCF;
header[1] = 0xFA;
header[2] = 0xED;
header[3] = 0xFE;
// CPU type
BitConverter.GetBytes(cpuType).CopyTo(header, 4);
// CPU subtype
BitConverter.GetBytes(0).CopyTo(header, 8);
// File type
BitConverter.GetBytes(fileType).CopyTo(header, 12);
// Number of load commands
BitConverter.GetBytes((uint)0).CopyTo(header, 16);
// Size of load commands
BitConverter.GetBytes((uint)0).CopyTo(header, 20);
// Flags
BitConverter.GetBytes((uint)0).CopyTo(header, 24);
// Reserved (64-bit only)
BitConverter.GetBytes((uint)0).CopyTo(header, 28);
return header;
}
}
public class BinaryIdentityDeterminismTests
{
[Fact]
public async Task AllExtractors_SameContent_ProduceSameHash()
{
// Arrange: Create identical binary content
var content = new byte[256];
new Random(42).NextBytes(content);
// ELF header
content[0] = 0x7F;
content[1] = 0x45;
content[2] = 0x4C;
content[3] = 0x46;
content[4] = 0x02; // 64-bit
content[5] = 0x01; // little-endian
BitConverter.GetBytes((ushort)0x3E).CopyTo(content, 18); // x86_64
BitConverter.GetBytes((ushort)0x02).CopyTo(content, 16); // executable
var extractor = new ElfFeatureExtractor();
// Act: Extract identity multiple times
using var stream1 = new MemoryStream(content);
using var stream2 = new MemoryStream(content);
using var stream3 = new MemoryStream(content);
var identity1 = await extractor.ExtractIdentityAsync(stream1);
var identity2 = await extractor.ExtractIdentityAsync(stream2);
var identity3 = await extractor.ExtractIdentityAsync(stream3);
// Assert: All identities should be identical
identity1.FileSha256.Should().Be(identity2.FileSha256);
identity2.FileSha256.Should().Be(identity3.FileSha256);
identity1.BinaryKey.Should().Be(identity2.BinaryKey);
identity2.BinaryKey.Should().Be(identity3.BinaryKey);
}
[Fact]
public async Task DifferentContent_ProducesDifferentHash()
{
// Arrange
var content1 = CreateMinimalElf(0x01);
var content2 = CreateMinimalElf(0x02);
var extractor = new ElfFeatureExtractor();
// Act
using var stream1 = new MemoryStream(content1);
using var stream2 = new MemoryStream(content2);
var identity1 = await extractor.ExtractIdentityAsync(stream1);
var identity2 = await extractor.ExtractIdentityAsync(stream2);
// Assert: Different content should produce different identities
identity1.FileSha256.Should().NotBe(identity2.FileSha256);
}
private static byte[] CreateMinimalElf(byte variant)
{
var header = new byte[64];
header[0] = 0x7F;
header[1] = 0x45;
header[2] = 0x4C;
header[3] = 0x46;
header[4] = 0x02;
header[5] = 0x01;
header[6] = variant; // Vary the version byte
BitConverter.GetBytes((ushort)0x3E).CopyTo(header, 18);
BitConverter.GetBytes((ushort)0x02).CopyTo(header, 16);
return header;
}
}

View File

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// -----------------------------------------------------------------------------
// ParserTests.cs
// Sprint: SPRINT_20251226_012_BINIDX_backport_handling
// Task: BACKPORT-19 — Unit tests for all parsers
// -----------------------------------------------------------------------------
using FluentAssertions;
using StellaOps.BinaryIndex.FixIndex.Models;
using StellaOps.BinaryIndex.FixIndex.Parsers;
using Xunit;
namespace StellaOps.BinaryIndex.Core.Tests.FixIndex;
public class DebianChangelogParserTests
{
private readonly DebianChangelogParser _sut = new();
[Fact]
public void ParseTopEntry_ExtractsCveFromChangelog()
{
// Arrange
var changelog = """
openssl (3.0.11-1~deb12u2) bookworm-security; urgency=high
* Fix CVE-2024-0727: PKCS12 decoding crash
* Fix CVE-2024-2511: memory leak in TLSv1.3
-- Debian Security Team <security@debian.org> Mon, 15 Jan 2024 10:00:00 +0000
openssl (3.0.11-1~deb12u1) bookworm; urgency=medium
* Update to 3.0.11
""";
// Act
var results = _sut.ParseTopEntry(changelog, "debian", "bookworm", "openssl").ToList();
// Assert
results.Should().HaveCount(2);
results.Should().Contain(e => e.CveId == "CVE-2024-0727");
results.Should().Contain(e => e.CveId == "CVE-2024-2511");
results.Should().AllSatisfy(e =>
{
e.Distro.Should().Be("debian");
e.Release.Should().Be("bookworm");
e.SourcePkg.Should().Be("openssl");
e.State.Should().Be(FixState.Fixed);
e.FixedVersion.Should().Be("3.0.11-1~deb12u2");
e.Method.Should().Be(FixMethod.Changelog);
e.Confidence.Should().Be(0.80m);
});
}
[Fact]
public void ParseTopEntry_ReturnsEmptyForNoMention()
{
// Arrange
var changelog = """
package (1.0-1) stable; urgency=low
* Initial release
-- Maintainer <m@example.com> Mon, 01 Jan 2024 12:00:00 +0000
""";
// Act
var results = _sut.ParseTopEntry(changelog, "debian", "stable", "package").ToList();
// Assert
results.Should().BeEmpty();
}
[Fact]
public void ParseTopEntry_HandlesEmptyChangelog()
{
// Act
var results = _sut.ParseTopEntry("", "debian", "stable", "package").ToList();
// Assert
results.Should().BeEmpty();
}
[Fact]
public void ParseTopEntry_DeduplicatesCves()
{
// Arrange - Same CVE mentioned twice
var changelog = """
package (1.0-1) stable; urgency=high
* Fix CVE-2024-1234 in parser
* Also addresses CVE-2024-1234 in handler
-- Maintainer <m@example.com> Mon, 01 Jan 2024 12:00:00 +0000
""";
// Act
var results = _sut.ParseTopEntry(changelog, "debian", "stable", "package").ToList();
// Assert
results.Should().HaveCount(1);
results[0].CveId.Should().Be("CVE-2024-1234");
}
}
public class AlpineSecfixesParserTests
{
private readonly AlpineSecfixesParser _sut = new();
[Fact]
public void Parse_ExtractsCvesFromSecfixes()
{
// Arrange
var apkbuild = """
pkgname=openssl
pkgver=3.1.4
pkgrel=1
# secfixes:
# 3.1.4-r0:
# - CVE-2024-0727
# - CVE-2024-2511
# 3.1.3-r0:
# - CVE-2023-5678
build() {
./configure
}
""";
// Act
var results = _sut.Parse(apkbuild, "alpine", "v3.19", "openssl").ToList();
// Assert
results.Should().HaveCount(3);
var v314 = results.Where(e => e.FixedVersion == "3.1.4-r0").ToList();
v314.Should().HaveCount(2);
v314.Should().Contain(e => e.CveId == "CVE-2024-0727");
v314.Should().Contain(e => e.CveId == "CVE-2024-2511");
var v313 = results.Where(e => e.FixedVersion == "3.1.3-r0").ToList();
v313.Should().HaveCount(1);
v313[0].CveId.Should().Be("CVE-2023-5678");
results.Should().AllSatisfy(e =>
{
e.Distro.Should().Be("alpine");
e.Release.Should().Be("v3.19");
e.State.Should().Be(FixState.Fixed);
e.Method.Should().Be(FixMethod.SecurityFeed);
e.Confidence.Should().Be(0.95m);
});
}
[Fact]
public void Parse_IgnoresNonSecfixesComments()
{
// Arrange
var apkbuild = """
# This is a regular comment
# CVE-2024-9999 is not in secfixes
pkgname=test
""";
// Act
var results = _sut.Parse(apkbuild, "alpine", "v3.19", "test").ToList();
// Assert
results.Should().BeEmpty();
}
[Fact]
public void Parse_StopsAtNonCommentLine()
{
// Arrange
var apkbuild = """
# secfixes:
# 1.0-r0:
# - CVE-2024-1111
pkgname=test
# - CVE-2024-2222
""";
// Act
var results = _sut.Parse(apkbuild, "alpine", "edge", "test").ToList();
// Assert
results.Should().HaveCount(1);
results[0].CveId.Should().Be("CVE-2024-1111");
}
}
public class PatchHeaderParserTests
{
private readonly PatchHeaderParser _sut = new();
[Fact]
public void ParsePatches_ExtractsCveFromHeader()
{
// Arrange
var patches = new[]
{
(
Path: "debian/patches/CVE-2024-1234.patch",
Content: """
Description: Fix buffer overflow
Origin: upstream, https://github.com/proj/commit/abc123
Bug-Debian: https://bugs.debian.org/123456
CVE: CVE-2024-1234
Applied-Upstream: 2.0.0
--- a/src/parser.c
+++ b/src/parser.c
@@ -100,6 +100,8 @@
""",
Sha256: "abc123def456"
)
};
// Act
var results = _sut.ParsePatches(patches, "debian", "bookworm", "libfoo", "1.2.3-1").ToList();
// Assert
results.Should().HaveCount(1);
results[0].CveId.Should().Be("CVE-2024-1234");
results[0].Method.Should().Be(FixMethod.PatchHeader);
results[0].FixedVersion.Should().Be("1.2.3-1");
results[0].Evidence.Should().BeOfType<PatchHeaderEvidence>();
var evidence = (PatchHeaderEvidence)results[0].Evidence;
evidence.PatchPath.Should().Be("debian/patches/CVE-2024-1234.patch");
evidence.PatchSha256.Should().Be("abc123def456");
}
[Fact]
public void ParsePatches_ExtractsCveFromFilename()
{
// Arrange - CVE only in filename, not header
var patches = new[]
{
(
Path: "CVE-2024-5678.patch",
Content: """
Fix memory leak
--- a/foo.c
+++ b/foo.c
""",
Sha256: "sha256hash"
)
};
// Act
var results = _sut.ParsePatches(patches, "ubuntu", "jammy", "bar", "1.0").ToList();
// Assert
results.Should().HaveCount(1);
results[0].CveId.Should().Be("CVE-2024-5678");
}
[Fact]
public void ParsePatches_ReturnsEmptyForNoCve()
{
// Arrange
var patches = new[]
{
(
Path: "fix-typo.patch",
Content: "--- a/README\n+++ b/README",
Sha256: "hash"
)
};
// Act
var results = _sut.ParsePatches(patches, "debian", "sid", "pkg", "1.0").ToList();
// Assert
results.Should().BeEmpty();
}
}
public class RpmChangelogParserTests
{
private readonly RpmChangelogParser _sut = new();
[Fact]
public void ParseTopEntry_ExtractsCveFromSpecChangelog()
{
// Arrange
var spec = """
Name: openssl
Version: 3.0.7
Release: 27.el9
%description
OpenSSL toolkit
%changelog
* Mon Jan 15 2024 Security Team <security@redhat.com> - 3.0.7-27
- Fix CVE-2024-0727: PKCS12 crash
- Fix CVE-2024-2511: memory leak
* Tue Dec 05 2023 Security Team <security@redhat.com> - 3.0.7-26
- Fix CVE-2023-5678
""";
// Act
var results = _sut.ParseTopEntry(spec, "rhel", "9", "openssl").ToList();
// Assert
results.Should().HaveCount(2);
results.Should().Contain(e => e.CveId == "CVE-2024-0727");
results.Should().Contain(e => e.CveId == "CVE-2024-2511");
results.Should().AllSatisfy(e =>
{
e.Distro.Should().Be("rhel");
e.Release.Should().Be("9");
e.FixedVersion.Should().Be("3.0.7-27");
e.Method.Should().Be(FixMethod.Changelog);
e.Confidence.Should().Be(0.75m);
});
}
[Fact]
public void ParseAllEntries_ExtractsFromMultipleEntries()
{
// Arrange
var spec = """
%changelog
* Mon Jan 15 2024 Packager <p@example.com> - 2.0-1
- Fix CVE-2024-1111
* Mon Dec 01 2023 Packager <p@example.com> - 1.9-1
- Fix CVE-2023-2222
- Fix CVE-2023-3333
""";
// Act
var results = _sut.ParseAllEntries(spec, "fedora", "39", "pkg").ToList();
// Assert
results.Should().HaveCount(3);
var v20 = results.Where(e => e.FixedVersion == "2.0-1").ToList();
v20.Should().HaveCount(1);
v20[0].CveId.Should().Be("CVE-2024-1111");
var v19 = results.Where(e => e.FixedVersion == "1.9-1").ToList();
v19.Should().HaveCount(2);
}
[Fact]
public void ParseTopEntry_StopsAtSecondEntry()
{
// Arrange
var spec = """
%changelog
* Mon Jan 15 2024 P <p@x.com> - 2.0-1
- Fix CVE-2024-1111
* Mon Dec 01 2023 P <p@x.com> - 1.9-1
- Fix CVE-2023-2222
""";
// Act
var results = _sut.ParseTopEntry(spec, "centos", "9", "pkg").ToList();
// Assert
results.Should().HaveCount(1);
results[0].CveId.Should().Be("CVE-2024-1111");
}
[Fact]
public void ParseTopEntry_HandlesNoChangelog()
{
// Arrange
var spec = """
Name: test
Version: 1.0
""";
// Act
var results = _sut.ParseTopEntry(spec, "rhel", "9", "test").ToList();
// Assert
results.Should().BeEmpty();
}
}

View File

@@ -0,0 +1,29 @@
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